Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_I08
(437 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 76 3e-15
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 74 8e-15
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 69 3e-13
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 62 5e-11
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 55 4e-09
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 54 1e-08
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 51 9e-08
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 50 2e-07
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 48 5e-07
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 48 6e-07
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 44 1e-05
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 41 7e-05
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 2.2
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 26 2.9
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 6.7
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 25 6.7
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 25 6.7
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 75.8 bits (178), Expect = 3e-15
Identities = 30/80 (37%), Positives = 52/80 (65%)
Frame = +3
Query: 9 FKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEF 188
F T+IYHPN D +G VCL I+ + +KP+ K V++ ++ L+ +P P+ PL A +AE++
Sbjct: 75 FTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQY 134
Query: 189 LKDRKKFTKNAEEFTKKHSE 248
DR F K A ++ ++ ++
Sbjct: 135 RNDRPSFDKIARDYVEQFAK 154
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 74.1 bits (174), Expect = 8e-15
Identities = 30/79 (37%), Positives = 51/79 (64%)
Frame = +3
Query: 9 FKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEF 188
F T+IYHPNI+ G +CL I+ + W PA +V+ ++ +L+ DP P+ PL E+A +
Sbjct: 69 FTTRIYHPNINSNGSICLDILR-DQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVY 127
Query: 189 LKDRKKFTKNAEEFTKKHS 245
DR ++ +A E+T+K++
Sbjct: 128 KTDRSRYELSAREWTRKYA 146
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 68.9 bits (161), Expect = 3e-13
Identities = 30/80 (37%), Positives = 53/80 (66%)
Frame = +3
Query: 6 RFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEE 185
RF TKIYHPN+D+ G++CL + ++W PA + V+ ++ AL+ P P+ PL ++A+
Sbjct: 69 RFLTKIYHPNVDKLGRICLSTLK-KDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKI 127
Query: 186 FLKDRKKFTKNAEEFTKKHS 245
+ ++ + NA E+TKK++
Sbjct: 128 WKENEPQAIANAREWTKKYA 147
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 61.7 bits (143), Expect = 5e-11
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +3
Query: 9 FKTKIYHPNI-DEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEE 185
F TKIYHPN+ + G +CL I+ + W P + +L +L+ PEP +P A++A+
Sbjct: 72 FDTKIYHPNVSSQTGAICLDILK-DQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQV 130
Query: 186 FLKDRKKFTKNAEEFTKKHS 245
+L++ ++F + A E+T ++
Sbjct: 131 YLQNYQQFVRTAREWTSSYA 150
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 55.2 bits (127), Expect = 4e-09
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +3
Query: 6 RFKTKIYHPNIDEKGQVCLPIISAEN-WKPATKTDQVIQALVALVNDPEPEHPLRAELAE 182
RF ++HPN+ G VCL I++ E WKPA Q++ + L++DP P + E
Sbjct: 76 RFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYT 135
Query: 183 EFLKDRKKFTKNAEEFTKKHS 245
F KD+ ++ K ++++
Sbjct: 136 MFKKDKVEYEKRVRAQARENA 156
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 54.0 bits (124), Expect = 1e-08
Identities = 27/73 (36%), Positives = 36/73 (49%)
Frame = +3
Query: 18 KIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKD 197
KIYHPNID +G VCL I+ ++W P + ++ L L P E PL E A + KD
Sbjct: 92 KIYHPNIDIEGNVCLNIL-RQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKD 150
Query: 198 RKKFTKNAEEFTK 236
+ F K
Sbjct: 151 PQGFASRVRTAMK 163
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 50.8 bits (116), Expect = 9e-08
Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 12/93 (12%)
Frame = +3
Query: 6 RFKTKIYHPNIDEKGQVCLPII------------SAENWKPATKTDQVIQALVALVNDPE 149
+F T+I+HPN+ G+VC+ I+ + E W P + ++ +++++++ P
Sbjct: 73 KFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPN 132
Query: 150 PEHPLRAELAEEFLKDRKKFTKNAEEFTKKHSE 248
E P + A+EF ++ ++F K ++ E
Sbjct: 133 DESPANIDAAKEFRENPQEFKKRVRRLVRRSIE 165
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 50.0 bits (114), Expect = 2e-07
Identities = 19/74 (25%), Positives = 41/74 (55%)
Frame = +3
Query: 6 RFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEE 185
+F + ++HPN+ G++CL I+ W P ++ ++ +L+NDP P AE A+
Sbjct: 71 KFVSTMFHPNVYANGELCLDILQ-NRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQL 129
Query: 186 FLKDRKKFTKNAEE 227
+++K++ + +
Sbjct: 130 HRENKKEYVRRVRK 143
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 48.4 bits (110), Expect = 5e-07
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +3
Query: 9 FKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEF 188
F + ++HPN+D G +CL I+ + W ++ +L +L+ +P PL A+ AE +
Sbjct: 97 FTSPMWHPNVDMSGNICLDILK-DKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELW 155
Query: 189 LKD 197
KD
Sbjct: 156 SKD 158
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 48.0 bits (109), Expect = 6e-07
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +3
Query: 9 FKTKIYHPNIDE-KGQVCLPIISAENWKPATKTDQVIQA-LVALVNDPEPEHPLRAELAE 182
F +I+HPNIDE G VCL +I+ + W P + + L L+ P PL E A
Sbjct: 68 FVNRIFHPNIDELSGSVCLDVIN-QTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAA 126
Query: 183 EFLKDRKKFTKNAEEFTKKHSEKRPTD 263
L++ + ++ +++ K D
Sbjct: 127 LLLREPNTYYAKVRDYIARYANKEDAD 153
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 43.6 bits (98), Expect = 1e-05
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 9 FKTKIYHPNID-EKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAE 182
F+TKI HPNI G+VC+ I+ +W PA A+++L+++ + PL + A+
Sbjct: 73 FQTKIVHPNISWTNGEVCMDILKT-HWSPAWSLQSACLAIISLLSNYDASSPLNVDAAK 130
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 41.1 bits (92), Expect = 7e-05
Identities = 17/90 (18%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Frame = +3
Query: 6 RFKTKIYHPNIDEKGQVCLPII------------SAENWKPATKTDQVIQALVALVNDPE 149
+F+ + +HPN+ + G VC+ I+ S+E W P ++++ ++++++ +P
Sbjct: 73 KFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPN 132
Query: 150 PEHPLRAELAEEFLKDRKKFTKNAEEFTKK 239
E + + + +DR+++ + +K
Sbjct: 133 DESGANIDACKMWREDREEYCRVVRRLARK 162
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 2.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 15 TKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVN 140
T + HP+ D + CL +I NW+ + + +A++A +N
Sbjct: 101 TGLEHPSTDVE-IFCLHLIRRANWEKKEIGEPLFEAIMACIN 141
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 2.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 162 LRAELAEEFLKDRKKFTKNAEEFTKKHSE 248
L AEL E++LKD+ K + E K SE
Sbjct: 464 LYAELQEQWLKDKSKKARRRAEREKLRSE 492
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 220 QKNLPKNIVKNDLQIKIGYSLHNCC 294
+K LP+++VK ++ YSL CC
Sbjct: 421 EKKLPEHLVKRKSRLVRQYSLAWCC 445
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 24.6 bits (51), Expect = 6.7
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 241 IVKNDLQIKIGYSLHNCCK*IYSTGWHITRAIPLAMTTVAIRICYTG 381
I+KND + GYS ++ C +Y T +H+ R + +A T A TG
Sbjct: 522 IIKNDFLQQNGYSDYDRCCPLYKT-YHMMRNM-IAYYTKAKSAVETG 566
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 21 IYHPNIDEKGQVCLPIISAENWKPATKTDQVI 116
I+H N D+ V A +W+ A KTD V+
Sbjct: 465 IFHVNGDDVEAVTFICQLAADWRKAFKTDVVV 496
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,476,320
Number of Sequences: 5004
Number of extensions: 24670
Number of successful extensions: 96
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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