Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_I08
(437 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 142 8e-35
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 73 9e-14
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 73 9e-14
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 73 9e-14
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 67 6e-12
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 53 8e-08
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 53 8e-08
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 53 8e-08
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 52 2e-07
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 52 2e-07
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 52 2e-07
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 51 3e-07
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 50 7e-07
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 46 1e-05
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 45 3e-05
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 42 1e-04
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 42 2e-04
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 36 0.010
AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf (tbp-asso... 33 0.12
U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical pr... 30 0.85
AC024881-7|AAK71417.1| 310|Caenorhabditis elegans Serpentine re... 28 3.4
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 27 4.5
Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta p... 27 6.0
AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha ... 27 6.0
AC024751-8|AAK21510.3| 369|Caenorhabditis elegans Hypothetical ... 27 6.0
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 27 7.9
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 142 bits (345), Expect = 8e-35
Identities = 58/83 (69%), Positives = 75/83 (90%)
Frame = +3
Query: 9 FKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEF 188
F+TKIYHPN+DE+G+ CLPI++AENWKPATKT+QV+ AL++L+N+PEP HP+RA++AEEF
Sbjct: 70 FETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLINEPEPSHPIRADVAEEF 129
Query: 189 LKDRKKFTKNAEEFTKKHSEKRP 257
KD KKF K AEE T+KH+EKRP
Sbjct: 130 QKDHKKFMKTAEEHTRKHAEKRP 152
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 72.9 bits (171), Expect = 9e-14
Identities = 30/79 (37%), Positives = 53/79 (67%)
Frame = +3
Query: 9 FKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEF 188
F T+IYHPNI+ G +CL I+ ++ W PA +V+ ++ +L+ DP P+ PL E+A +
Sbjct: 69 FTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 127
Query: 189 LKDRKKFTKNAEEFTKKHS 245
DR+++ + A E+T+K++
Sbjct: 128 KTDRERYNQLAREWTQKYA 146
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 72.9 bits (171), Expect = 9e-14
Identities = 30/79 (37%), Positives = 53/79 (67%)
Frame = +3
Query: 9 FKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEF 188
F T+IYHPNI+ G +CL I+ ++ W PA +V+ ++ +L+ DP P+ PL E+A +
Sbjct: 69 FTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 127
Query: 189 LKDRKKFTKNAEEFTKKHS 245
DR+++ + A E+T+K++
Sbjct: 128 KTDRERYNQLAREWTQKYA 146
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 72.9 bits (171), Expect = 9e-14
Identities = 31/81 (38%), Positives = 54/81 (66%)
Frame = +3
Query: 6 RFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEE 185
RF TKIYHPNID+ G++CL I+ + W PA + V+ ++ AL++ P PE PL ++AE+
Sbjct: 71 RFMTKIYHPNIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPEDPLATDVAEQ 129
Query: 186 FLKDRKKFTKNAEEFTKKHSE 248
+ + + K A+++T +++
Sbjct: 130 WKTNEAEAIKTAKQWTMNYAQ 150
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 66.9 bits (156), Expect = 6e-12
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +3
Query: 6 RFKTKIYHPNIDEKG-QVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAE 182
+F +YHPN+D ++C P++ ENWKP T + V+ L+ L+N+P+ P+ + A
Sbjct: 80 KFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLLNEPDLSRPVNIDAAH 139
Query: 183 EFLKDRKKFTKNAEEFTKK 239
+++ ++ +F K + E KK
Sbjct: 140 DYIHNKVEFVKKSTELAKK 158
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 53.2 bits (122), Expect = 8e-08
Identities = 22/81 (27%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +3
Query: 6 RFKTKIYHPNIDEKGQVCLPIISA-ENWKPATKTDQVIQALVALVNDPEPEHPLRAELAE 182
+F+ ++HPN+ G VCL ++ ++WKP+ Q++ + L+N P E P +AE +
Sbjct: 76 KFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQ 135
Query: 183 EFLKDRKKFTKNAEEFTKKHS 245
+ ++R ++ K ++ K++
Sbjct: 136 IYCQNRAEYEKRVKKEAVKYA 156
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 53.2 bits (122), Expect = 8e-08
Identities = 22/81 (27%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +3
Query: 6 RFKTKIYHPNIDEKGQVCLPIISA-ENWKPATKTDQVIQALVALVNDPEPEHPLRAELAE 182
+F+ ++HPN+ G VCL ++ ++WKP+ Q++ + L+N P E P +AE +
Sbjct: 76 KFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQ 135
Query: 183 EFLKDRKKFTKNAEEFTKKHS 245
+ ++R ++ K ++ K++
Sbjct: 136 IYCQNRAEYEKRVKKEAVKYA 156
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 53.2 bits (122), Expect = 8e-08
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 6 RFKTKIYHPNI-DEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAE 182
+F TKI+HPN+ + G +CL I+ + W + V+ ++ AL+ PEP+ P A +A+
Sbjct: 74 KFSTKIWHPNVSSQTGVICLDILK-DQWAASLTLRTVLLSIQALMCTPEPKDPQDAVVAK 132
Query: 183 EFLKDRKKFTKNAEEFTKKHSE 248
++++ F AE +T K ++
Sbjct: 133 QYMEKPAVFKATAEYWTTKFAK 154
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 52.0 bits (119), Expect = 2e-07
Identities = 18/78 (23%), Positives = 45/78 (57%)
Frame = +3
Query: 6 RFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEE 185
+F +K++HPN+ G +CL I+ W P ++ ++ +L+++P P P + A+
Sbjct: 71 KFISKMFHPNVYADGSICLDILQ-NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQL 129
Query: 186 FLKDRKKFTKNAEEFTKK 239
+ ++R+++ K ++ ++
Sbjct: 130 YQENRREYEKRVQQIVEQ 147
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 52.0 bits (119), Expect = 2e-07
Identities = 18/78 (23%), Positives = 45/78 (57%)
Frame = +3
Query: 6 RFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEE 185
+F +K++HPN+ G +CL I+ W P ++ ++ +L+++P P P + A+
Sbjct: 71 KFISKMFHPNVYADGSICLDILQ-NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQL 129
Query: 186 FLKDRKKFTKNAEEFTKK 239
+ ++R+++ K ++ ++
Sbjct: 130 YQENRREYEKRVQQIVEQ 147
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 51.6 bits (118), Expect = 2e-07
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +3
Query: 6 RFKTKIYHPNI-DEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAE 182
+F T+I+HPNI + G +CL I+ + W + V+ +L A++ PEP P A +A+
Sbjct: 103 KFVTRIWHPNISSQTGTICLDILK-DKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAK 161
Query: 183 EFLKDRKKFTKNAEEFT 233
+F+ + FT A +T
Sbjct: 162 QFINNYPMFTATAVYWT 178
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 51.2 bits (117), Expect = 3e-07
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Frame = +3
Query: 6 RFKTKIYHPNIDEKGQVCLPIISA------------ENWKPATKTDQVIQALVALVNDPE 149
RF I+HPNI G+VC+ I+ A E W P ++++ ++V+++ +P
Sbjct: 72 RFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLSVVSMLAEPN 131
Query: 150 PEHPLRAELAEEFLKDRKKFTKNAEEFTKK 239
E P A+ + +DR +F K A+ +K
Sbjct: 132 DESPANVSAAKMWREDRAQFEKIADSLVRK 161
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 50.0 bits (114), Expect = 7e-07
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = +3
Query: 15 TKIYHPNIDEKGQVCLPIISAEN-----WKPATKTDQVIQALVALVND-PEPEHPLRAEL 176
TK++HPNI+E G +CL I+ + W+P V+ LV+L ND + L +
Sbjct: 98 TKVWHPNINEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQA 157
Query: 177 AEEFLKDRKKFTKNAEEFTKKH 242
A+ + ++R+ F E+ ++
Sbjct: 158 AQMWSQNRESFNHRVREYISRY 179
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Frame = +3
Query: 6 RFKTKIYHPNIDEKGQVCLPII------------SAENWKPATKTDQVIQALVALVNDPE 149
+F ++I+HPNID++G VC+ I+ E W P + ++ ++++++ DP
Sbjct: 71 KFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPN 130
Query: 150 PEHPLRAELAEEFLKDRKKFTKNAEEFTKKHSEK 251
E P + A+ ++ +F K + ++ E+
Sbjct: 131 FESPANVDAAKMQRENYAEFKKKVAQCVRRSQEE 164
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 44.8 bits (101), Expect = 3e-05
Identities = 18/74 (24%), Positives = 37/74 (50%)
Frame = +3
Query: 9 FKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEF 188
FKT ++HPN+D +G + L ++ E+W T ++++ + L+ P+ E E+
Sbjct: 106 FKTPLHHPNVDLRGSIYLKMLEQEHWSSETSLKKLLREISNLLATPDLTQAANIEAWMEY 165
Query: 189 LKDRKKFTKNAEEF 230
R+ + A +
Sbjct: 166 ENQRENYEAKARAY 179
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 42.3 bits (95), Expect = 1e-04
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Frame = +3
Query: 6 RFKTKIYHPNIDEKGQVCLPI------------ISAENWKPATKTDQVIQALVALVNDPE 149
+F TK++HPN+ E G +C+ I ++ E W P ++ ++++L+N+P
Sbjct: 77 KFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLSVISLLNEPN 136
Query: 150 PEHPLRAELAEEFLK 194
P + + + K
Sbjct: 137 TSSPANVDASVMYRK 151
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +3
Query: 9 FKTKIYHPNIDE-KGQVCLPIISAENWKPATKTDQVIQA-LVALVNDPEPEHPLRAELAE 182
F KI+HPNIDE G VCL +I+ + W + L L+ P PL E A
Sbjct: 71 FLNKIFHPNIDEASGTVCLDVIN-QAWTALYDLTNIFDTFLPQLLTYPNAADPLNGEAAR 129
Query: 183 EFLKDRKKFTKNAEEFTKKHSEK 251
++ +++ + E+ + + +
Sbjct: 130 LYIHKPEEYRRTCREYVMRFASE 152
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 36.3 bits (80), Expect = 0.010
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 27 HPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALV-NDPEPEHPL 164
HP+I G +CL I+S ++W PA V ++++++ + E +HP+
Sbjct: 82 HPHIYSNGHICLSILS-DDWTPALSVQSVCLSILSMLSSSKEKKHPI 127
>AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 4
protein.
Length = 523
Score = 32.7 bits (71), Expect = 0.12
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 72 SAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTK 236
+A + K TK + ++ L+ L N+ +PE P +A +E ++ AEEFT+
Sbjct: 97 AASDDKNVTKCVRFLKTLINLSNNDDPEMPDKAARVKELIRGVIYLETTAEEFTR 151
>U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical
protein F20D6.8 protein.
Length = 370
Score = 29.9 bits (64), Expect = 0.85
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 135 VNDPEPEHPLRAELAEEF-LKDRKKFTKNAEEFTKKHSEK 251
+ND EPE P+R+ F L+D F K F KK SEK
Sbjct: 100 INDEEPEFPIRSTRLRSFDLRDGHIFDKG---FQKKPSEK 136
>AC024881-7|AAK71417.1| 310|Caenorhabditis elegans Serpentine
receptor, class sx protein3 protein.
Length = 310
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 4 RGSKQKSITQTLMKKVKCAYLLLV 75
RG KQKS T+ LMK++K + ++ V
Sbjct: 194 RGKKQKSDTRKLMKRLKVSVVVFV 217
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 27.5 bits (58), Expect = 4.5
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 93 ATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTK---KHSEKRPT 260
+++T V + L + ++ +P A EEF K +KK K++E K K KRPT
Sbjct: 1037 SSETTGVRRTLRSTQDNSDPLDASLATTIEEFRKTKKKDAKSSENRAKEKQKPMNKRPT 1095
>Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical
protein F11C1.6b protein.
Length = 492
Score = 27.1 bits (57), Expect = 6.0
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 75 AENWKPATKTDQVIQALVALVNDPEPE-HPLRAELAEEFLKDRKKFTKNAEEFTK 236
AE K Q+ + ++ +PE H ++AEE LKD + KN + F+K
Sbjct: 241 AEMCKTLPDDAQIARIFTSVKGTSKPEKHAFSIQVAEENLKDIVIWAKNDQLFSK 295
>Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical
protein F11C1.6a protein.
Length = 572
Score = 27.1 bits (57), Expect = 6.0
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 75 AENWKPATKTDQVIQALVALVNDPEPE-HPLRAELAEEFLKDRKKFTKNAEEFTK 236
AE K Q+ + ++ +PE H ++AEE LKD + KN + F+K
Sbjct: 321 AEMCKTLPDDAQIARIFTSVKGTSKPEKHAFSIQVAEENLKDIVIWAKNDQLFSK 375
>AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta
protein.
Length = 492
Score = 27.1 bits (57), Expect = 6.0
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 75 AENWKPATKTDQVIQALVALVNDPEPE-HPLRAELAEEFLKDRKKFTKNAEEFTK 236
AE K Q+ + ++ +PE H ++AEE LKD + KN + F+K
Sbjct: 241 AEMCKTLPDDAQIARIFTSVKGTSKPEKHAFSIQVAEENLKDIVIWAKNDQLFSK 295
>AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha
protein.
Length = 568
Score = 27.1 bits (57), Expect = 6.0
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 75 AENWKPATKTDQVIQALVALVNDPEPE-HPLRAELAEEFLKDRKKFTKNAEEFTK 236
AE K Q+ + ++ +PE H ++AEE LKD + KN + F+K
Sbjct: 317 AEMCKTLPDDAQIARIFTSVKGTSKPEKHAFSIQVAEENLKDIVIWAKNDQLFSK 371
>AC024751-8|AAK21510.3| 369|Caenorhabditis elegans Hypothetical
protein Y18H1A.7 protein.
Length = 369
Score = 27.1 bits (57), Expect = 6.0
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +3
Query: 72 SAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHSEK 251
S EN + A T+Q I A + P P+ P AE E K K K + +K SEK
Sbjct: 119 STEN-QDAPATEQTILNNRAAGSSPSPKSPRFAEKPSEIAKSTPKIRK-LVKISKICSEK 176
Query: 252 RP 257
P
Sbjct: 177 LP 178
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 26.6 bits (56), Expect = 7.9
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 51 QVCLPIIS--AENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAE 224
++CL I + W PA +I L++ +ND +P L + + E +RK K ++
Sbjct: 88 RLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQP--TLGSLVTSE--SERKLLAKKSK 143
Query: 225 EFTKK 239
++ K
Sbjct: 144 QWNLK 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,106,262
Number of Sequences: 27780
Number of extensions: 137506
Number of successful extensions: 508
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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