Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_I07
(364 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 46 2e-06
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 44 6e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 41 5e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 41 7e-05
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 39 2e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 4e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 4e-04
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 38 6e-04
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 37 8e-04
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 36 0.001
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.002
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.002
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 35 0.003
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 35 0.003
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 35 0.003
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.004
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 34 0.006
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 34 0.006
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 33 0.018
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 32 0.024
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 31 0.042
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.073
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 30 0.096
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 30 0.096
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 30 0.096
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 0.22
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 0.39
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 28 0.51
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 27 0.90
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 0.90
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 27 0.90
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 1.2
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 1.6
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 2.1
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 26 2.1
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 25 2.7
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce... 25 2.7
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 25 2.7
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 25 3.6
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 3.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 3.6
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 4.8
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 4.8
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 25 4.8
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 4.8
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 4.8
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 24 6.3
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 24 8.3
SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 8.3
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 24 8.3
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 24 8.3
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 45.6 bits (103), Expect = 2e-06
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Frame = +3
Query: 18 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNEAIK 176
T +F+ NL + + F FG ++ C + + YGFVH D+ N AI+
Sbjct: 167 TGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIE 226
Query: 177 ELNGMMVDGQPMKVQLSTSRVRQR 248
+NGM+++ + + V SR R+R
Sbjct: 227 HVNGMLLNDKKVYVGHHVSR-RER 249
Score = 40.3 bits (90), Expect = 9e-05
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Frame = +3
Query: 27 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNEAIKELN 185
+F+ NL D+ ++ F FGT+ I+ + +GFV + N+A+ E+N
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Query: 186 GMMVDGQPMKVQLSTSRVRQR 248
M+ G+P+ V L+ + +R
Sbjct: 426 QRMLAGKPLYVALAQRKEVRR 446
Score = 32.3 bits (70), Expect = 0.024
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Frame = +3
Query: 9 STPTT-KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDV 161
+ PT+ ++VG L + ELF G V + R+ Y +V+ D
Sbjct: 75 TAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDG 134
Query: 162 NEAIKELNGMMVDGQPMKVQLS 227
+A+ ELN ++ G+P ++ S
Sbjct: 135 EKALDELNYTLIKGRPCRIMWS 156
Score = 30.7 bits (66), Expect = 0.073
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Frame = +3
Query: 21 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNEAIKE 179
T +++ NL + E +LF +FG + +V R +GFV+ +A+ E
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 180 LNGMMVDGQPMKV 218
LN G+ + V
Sbjct: 321 LNDKEYKGKKLYV 333
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 44.4 bits (100), Expect = 6e-06
Identities = 16/76 (21%), Positives = 40/76 (52%)
Frame = +3
Query: 21 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNEAIKELNGMMVD 200
T++FVG + + ++ + F+ +G +++C ++ +GFV ++ D + + + G
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFM 63
Query: 201 GQPMKVQLSTSRVRQR 248
G + V+ + R+R
Sbjct: 64 GSRIVVEPARGERRRR 79
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 41.1 bits (92), Expect = 5e-05
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Frame = +3
Query: 27 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNEAIKEL 182
+FV + + + E++++F KFGTV I+ R +GF+ + AI L
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 183 NGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECP---KALGPDRNGFRD 353
N G+ + VQ + R RP P + R + S++ P K G RN +RD
Sbjct: 163 NSQEFYGRVLNVQKAK---RSRPHSPTPGKYMGYDRRRN-SRDFPSNNKDGGYRRNNYRD 218
Query: 354 R 356
R
Sbjct: 219 R 219
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 40.7 bits (91), Expect = 7e-05
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Frame = +3
Query: 15 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNEA 170
P +FV L T+ ++ +F +FG ++ C ++R+ Y F+ D V +A
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
Query: 171 IKELNGMMVDGQPMKVQLSTSRVRQR 248
++ +++D + V S S R R
Sbjct: 302 YFKMQNVLIDDSRIHVDFSQSVARYR 327
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.1 bits (87), Expect = 2e-04
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Frame = +3
Query: 24 KIFVGNLTDKTRAPEVRELFQKFGTVVECDI----VR--------NYGFVHLDATGDVNE 167
++FVG L+ T+ E+R LF+ GTV + I VR FV + DV++
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 168 AIKELNGMMVDGQPMKVQLSTSRVRQRP 251
AI+ LNG +D + + VQ V+++P
Sbjct: 105 AIETLNGKTLDDREIVVQ-KARPVQEQP 131
Score = 26.2 bits (55), Expect = 1.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 120 RNYGFVHLDATGDVNEAIKELNGMMVDGQPMKVQLSTSR 236
R +GFV D + AI+E+NG V + V+ + R
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFR 296
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 38.3 bits (85), Expect = 4e-04
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Frame = +3
Query: 9 STPTT---KIFVGNLTDKT--RAPEVRELFQKFGTVVEC--------DIVRNYGFVHLDA 149
STPT +FV NL D ++ ELF KFG + C +I + YGFV
Sbjct: 412 STPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSH 471
Query: 150 TGDVNEAIKELNGMMVDGQPMKVQLSTSR 236
+ +AI LNG++ + + V + R
Sbjct: 472 PFEAVQAINTLNGVLFGKKRLFVNYAEKR 500
Score = 29.1 bits (62), Expect = 0.22
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Frame = +3
Query: 27 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------------YGFVHLDATGDVNE 167
I+VGNL ++ ++ ELF+ FG + ++ + F+ + +
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 168 AIKELNGMMVDGQPMKVQ 221
AI LNG G +KV+
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 38.3 bits (85), Expect = 4e-04
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Frame = +3
Query: 24 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNEAIKEL 182
++FVGNL + + + F ++ ++V+ +VR+ +GFV + +A +E
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 183 NGMMVDGQPMKVQLSTSRVR 242
NG + +P+K+ +TS V+
Sbjct: 91 NGKYIGSRPVKLSRATSDVK 110
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 37.5 bits (83), Expect = 6e-04
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 27 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNEAIKELNGMMVD 200
+F+GNL E+ E F KFG + I+ +N FVH D + ++ L+ D
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS-CDPD 359
Query: 201 GQPMKVQLSTSRVRQRPGMGDPEQCY 278
++ + R P D C+
Sbjct: 360 YHSWRIFFGSDRCANHPPSFDERSCF 385
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 37.1 bits (82), Expect = 8e-04
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 273 CYRCGRGGHWSKECPKALGPDRNG 344
CYRCG+ GHW + CP P+ +G
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDG 208
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 36.3 bits (80), Expect = 0.001
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 21 TKIFVGNLTDKTRAPE-VRELFQKFGTVVECDIVRNYGFVHLDATGDVNEAIKELNGMMV 197
+++F+G+L K+ + + ++F+ +G + + + NYGFV D A+ G V
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFV 422
Query: 198 DGQPMKVQLS 227
GQ + +++S
Sbjct: 423 RGQKLHLEIS 432
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 35.9 bits (79), Expect = 0.002
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Frame = +3
Query: 27 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNEAIKEL 182
+FV NL +T+ ++ F G + +V N YGFV D A KEL
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 183 NGMMVDGQPMKVQLSTSRVR 242
+ G+ +++ +T R R
Sbjct: 67 KNKKLHGRILRLDFATPRKR 86
Score = 32.3 bits (70), Expect = 0.024
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = +3
Query: 24 KIFVGNLTDKTRAPEVREL-FQKFGTVVECDI-------VRNYGFVHLDATGDVNEAIKE 179
++ + NL + P+ E F KFG V E I + + FV + EA+
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 180 LNGMMVDGQPMKVQLSTSR 236
LNG +DG+P+ V + S+
Sbjct: 168 LNGTEIDGRPIAVDWAVSK 186
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.9 bits (79), Expect = 0.002
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Frame = +3
Query: 27 IFVGNLTDKTRAPEVRELFQ---------KFGTVVECDIVRNYGFVHLDATGDVNEAIKE 179
IFVG+L+ +V LF K T + ++ R YGFV D A+ E
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 180 LNGMMVDGQPMKVQLSTSR 236
+ G + +P++V L+T +
Sbjct: 248 MQGQICGDRPIRVGLATPK 266
Score = 33.1 bits (72), Expect = 0.014
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNEAIKELN 185
T + +FVG L+ E++ LFQ FG +V I + GFV AI +L
Sbjct: 300 TANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQ 359
Query: 186 GMMVDGQPMKVQLSTSRVRQRP 251
G + +++LS R Q P
Sbjct: 360 GYPLGNS--RIRLSWGR-NQNP 378
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.1 bits (77), Expect = 0.003
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Frame = +3
Query: 27 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNEAIKELN 185
I+VGNL T + +LF G+V+ I + +G V + D +I++LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 186 GMMVDGQPMKV 218
G G+P+++
Sbjct: 342 GYRYGGRPLQL 352
Score = 29.5 bits (63), Expect = 0.17
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 24 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 119
+++VGNL+ + R E++E + G V+ C+I+
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 35.1 bits (77), Expect = 0.003
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Frame = +3
Query: 15 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNEA 170
P +F+ L+ T+ ++ F ++G + +VRN Y FV + D+ A
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
Query: 171 IKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGG-HWSKECPK 320
K G+M++G+ + V + R R G + G GG H++KE P+
Sbjct: 158 YKASAGLMLNGRRIVVDVE----RGRTVKGWLPRKLGGGLGGRHYTKERPR 204
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 35.1 bits (77), Expect = 0.003
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Frame = +3
Query: 24 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNEAIKE 179
K+F+G L +T +R+ F++FG V++C ++R+ +GF+ VNE + +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 180 ---LNGMMVD 200
L+G ++D
Sbjct: 224 EHHLDGKIID 233
Score = 33.5 bits (73), Expect = 0.010
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Frame = +3
Query: 18 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNEAI 173
T K+FVG + E R F +FG V++ ++ R +GFV + V EA
Sbjct: 246 TAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAV-EAT 304
Query: 174 KELNGMMVDGQPMKVQLSTSRVRQR 248
+ + G+P++V+ +T + R
Sbjct: 305 MSQPYITIHGKPVEVKRATPKASLR 329
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 34.7 bits (76), Expect = 0.004
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 15 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNEAIKELNG 188
PT ++VGNL A V F +GTV ++ ++ F++ D+ ++ELNG
Sbjct: 585 PTHALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNG 644
Query: 189 MMV 197
+
Sbjct: 645 KRI 647
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 34.3 bits (75), Expect = 0.006
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Frame = +3
Query: 15 PTTKIFVGNLTDKTRAPE----VRELFQKFGTVVECDIVRN-----YGFVHLDATGDVNE 167
P +FV +L E V++ FQ++G ++ ++++ Y FV T D ++
Sbjct: 77 PVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASK 136
Query: 168 AIKELNGMMVDGQPMKVQ 221
A+ E ++DG+ ++++
Sbjct: 137 ALSEAQNTILDGRHIRIE 154
Score = 25.4 bits (53), Expect = 2.7
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Frame = +3
Query: 27 IFVGNLTDKTRAPE--VRELFQKFGTVVECDIVRN-----YGFVHLDATGDVNEAIKELN 185
IFVG L D + +LF K+G V++C I+ + F+ D+ A+
Sbjct: 367 IFVGQL-DPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCGKT 425
Query: 186 GMMVDGQPMKVQLSTSRVRQR 248
+P++V+ R Q+
Sbjct: 426 RSPHQKKPLRVEFRQLRPMQQ 446
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 34.3 bits (75), Expect = 0.006
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 27 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNEAIKEL 182
+F+GNL + E+RE + FG + + IV RN FVH +A++EL
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
Score = 26.6 bits (56), Expect = 1.2
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 27 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR--NYGFVHLDATGDVNEAIKEL 182
I++GN D ++E F++FG + + R N FV+ + AI +
Sbjct: 416 IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRI 469
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 32.7 bits (71), Expect = 0.018
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 27 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--GFVHL 143
+F+G +T R P +R +F++FG+V + NY GF+ +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 32.3 bits (70), Expect = 0.024
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Frame = +3
Query: 15 PTTKIFVGNLTDKTRAPEVRELFQK-FGTVVECDIV--------RNYGFVHLDATGDVNE 167
P IFVG+L T ++ F+ + + I+ R YGFV + +
Sbjct: 180 PEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQH 239
Query: 168 AIKELNGMMVDGQPMKVQLSTSRVR 242
A+ + G + G+P+++ +++ + R
Sbjct: 240 ALMHMQGYLCQGRPLRISVASPKSR 264
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 31.5 bits (68), Expect = 0.042
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 237 VRQRPGMGDPEQ---CYRCGRGGHWSKEC 314
VR P +P Q CY+CGR GH +++C
Sbjct: 70 VRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 30.3 bits (65), Expect = 0.096
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 270 QCYRCGRGGHWSKECPK 320
+CY CG GH ++EC K
Sbjct: 18 RCYNCGENGHQARECTK 34
Score = 30.3 bits (65), Expect = 0.096
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +3
Query: 261 DPEQ---CYRCGRGGHWSKECPKALGP 332
+P+Q CY CG GH ++CP + P
Sbjct: 53 EPQQEKTCYACGTAGHLVRDCPSSPNP 79
Score = 27.9 bits (59), Expect = 0.51
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 270 QCYRCGRGGHWSKECPKA 323
+CY CG+ GH S EC +A
Sbjct: 136 KCYSCGKIGHRSFECQQA 153
Score = 25.0 bits (52), Expect = 3.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +3
Query: 273 CYRCGRGGHWSKEC 314
CY CG GH +++C
Sbjct: 118 CYACGSYGHQARDC 131
Score = 24.2 bits (50), Expect = 6.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3
Query: 273 CYRCGRGGHWSKEC 314
CY C + GH + EC
Sbjct: 38 CYNCNQTGHKASEC 51
Score = 23.8 bits (49), Expect = 8.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 261 DPEQCYRCGRGGHWSKEC 314
D + CY+C + GH + C
Sbjct: 155 DGQLCYKCNQPGHIAVNC 172
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.7 bits (66), Expect = 0.073
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +3
Query: 9 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI--------VRNYGFVHLDATGDVN 164
S P+ +FVGNL+ ++ F G + + ++ +G+V
Sbjct: 362 SEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Query: 165 EAIKELNGMMVDGQPMKVQLSTSR 236
+ + E+NG + G+P ++ ST R
Sbjct: 422 KCV-EMNGHFIAGRPCRLDFSTPR 444
Score = 30.3 bits (65), Expect = 0.096
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +3
Query: 9 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 164
S T +FVG L+ + + F+++GT+V ++ + YG+V +
Sbjct: 259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
Query: 165 EAIKELNGMMVDGQPMKVQLSTSR 236
A+ +DG+ + + LS R
Sbjct: 319 AAVAANGTKEIDGRMVNLDLSNPR 342
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.3 bits (65), Expect = 0.096
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 15 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 125
P T++FV N++ + ++R F+ FG V + D+ N
Sbjct: 92 PPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 30.3 bits (65), Expect = 0.096
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +3
Query: 21 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG----FVHLDATGDVNEAIKELNG 188
T + + NL T + +V FG ++ C + + G V + +++L+G
Sbjct: 100 TNVVIENLAPGTSSDDVAATLLNFGEILNCQVNDSQGKVRASVRFSTLASAQQVVQKLDG 159
Query: 189 MMVDGQPMKVQLSTSRVRQR 248
+ DG + + + ++R
Sbjct: 160 VTADGFKLSCYIKKNSKKRR 179
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 30.3 bits (65), Expect = 0.096
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 33 VGNLTDKTRAPEVRELFQKFGTV 101
V NL+D TR E+R+LF++FG +
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGI 228
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 29.1 bits (62), Expect = 0.22
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Frame = +3
Query: 27 IFVGNLTDKTRAPEVRELFQKFGTVVECDI----VRN----YGFVHLDATGDVNEAIKEL 182
I++GNL +K + EL + G VV I VRN +GF DV A + L
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 183 NGMMVDGQPMKV 218
N + + G+P++V
Sbjct: 73 NQVKLFGKPIRV 84
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 0.39
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 240 GRGSSTAAPSWVARPPSCHSTL*WPRSRHPSRPNVRSHSYARYRTRPPSRTS-GTARGPP 64
G+ S++AAP PP+ S L P S P RP++ S A P ++ PP
Sbjct: 116 GKSSASAAPPSAPAPPTPQSELRPPTSA-PPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Query: 63 ARASCPL 43
A+ + P+
Sbjct: 175 AQPAAPV 181
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 27.9 bits (59), Expect = 0.51
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 171 WPRSRHPSRPNVRSHSYARYRTRPPSRTS 85
W + HP+ P+ ++ S ARY T SR S
Sbjct: 113 WNQPSHPTHPSPQNWSQARYPTYSRSRRS 141
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 27.1 bits (57), Expect = 0.90
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 273 CYRCGRGGHWSKECPKAL 326
C+ C GH SK+CP L
Sbjct: 89 CHNCKGNGHISKDCPHVL 106
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 0.90
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Frame = +3
Query: 21 TKIFVGNLTDK--TRAPEVRELFQKFGTVVE----C----DIVRNYGFVHLDATGDVNEA 170
+ ++V NL D T ++ +LF FG+++ C I + YGFV A
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Query: 171 IKELNGMMV 197
LNGMMV
Sbjct: 442 KDTLNGMMV 450
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.1 bits (57), Expect = 0.90
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Frame = +3
Query: 9 STPTTKIFVGNLTDKTRAPEVRELFQKF----GTVVECD---------IVRNYGFVHLDA 149
S T I+V NL T+ E +++F+ V+ + +GFV
Sbjct: 615 SLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKD 674
Query: 150 TGDVNEAIKELNGMMVDGQPMKVQLS 227
A+ +NG ++DG ++++LS
Sbjct: 675 KASAVAAMHAMNGFVLDGHKLEIKLS 700
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 1.2
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Frame = +3
Query: 27 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHLD-ATGDVNEAIKELN 185
+FV L ++ + E+ + F++ G V + IV R+ G +++ D +A L+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 186 GMMVDGQPMKVQLSTSRVRQR 248
G + G P+ VQL+ + ++
Sbjct: 302 GKRLLGLPVIVQLTEAEKNRK 322
Score = 26.2 bits (55), Expect = 1.6
Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +3
Query: 15 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNEAI 173
P ++ V N+ +V+ +F+ FG + + R+ +G++ A+
Sbjct: 338 PFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNAL 397
Query: 174 KELNGMMVDGQPMKVQLSTSR 236
+++NG + G+ M+V L +
Sbjct: 398 EKMNGFDLAGRNMRVCLGNDK 418
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 1.6
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 24 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 119
+I+VG L+ + ++ F +FG+V +I+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 2.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 280 DAVVAATGPRSAPRRSDQTATVFAIERS 363
DA++ G R A SDQT VF+IE +
Sbjct: 14 DAILDYYGKRLATCSSDQTIKVFSIENN 41
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 2.1
Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = +3
Query: 27 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNEAIKEL 182
+FVGN+ ++ E+F + G V +V + YGF + A+++L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 183 NGMMVDGQPMKVQLSTSRVRQ 245
N + + ++V+ ++ R+
Sbjct: 69 NNSELGPRKIRVEFPSNDPRR 89
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.4 bits (53), Expect = 2.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 100 TVPNFWNSSRTSGARVLSVRLPTN 29
T+P W SS++S ++ S LPT+
Sbjct: 107 TIPKRWRSSKSSSSQCSSPFLPTS 130
>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 292
Score = 25.4 bits (53), Expect = 2.7
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -2
Query: 306 WTSGRHDRIGSTARDRPCPVAAGRGSSTAAPSWVARPPSCHSTL 175
W+ GR DRI A +R A GR + + + + H +
Sbjct: 218 WSDGRRDRILKQAEERRSNRAVGRSNLSGREYFESNKDKTHEVV 261
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.4 bits (53), Expect = 2.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 232 LVDSCTFMGCPSTIMPFNSLMASFTSPVASKCT 134
+VDS T S+++P +S + + +S VAS T
Sbjct: 113 VVDSATSAAASSSVIPTSSSVVASSSEVASSTT 145
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 3.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 27 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 125
I++GNL ++ +F +FG V+ ++VR+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRD 65
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 3.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +3
Query: 273 CYRCGRGGHWSKEC 314
CY+CG+ H +EC
Sbjct: 1806 CYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 3.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +3
Query: 273 CYRCGRGGHWSKEC 314
CY+CG+ H +EC
Sbjct: 1806 CYKCGKADHNLREC 1819
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 24.6 bits (51), Expect = 4.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 15 PTTKIFVGNLTDKTRAPEVRELFQKFGTV 101
P++ +FVGNL +T +++E F + G +
Sbjct: 226 PSSILFVGNLDFETTDADLKEHFGQVGQI 254
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 4.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -1
Query: 328 PSALGHSLDQWPPRPHR*HCSGSPMPG 248
PS H+ +W H S SP+PG
Sbjct: 452 PSISSHNSAEWASGETTGHSSNSPLPG 478
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 4.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 198 DGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPKA 323
D + K + R+R+ + C+ C + GH ++CP+A
Sbjct: 54 DERQKKKRSEYRRLRRINQRNRDKFCFACRQQGHIVQDCPEA 95
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 24.6 bits (51), Expect = 4.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 191 HAIQLFDGLVHVTRRVQMYEAIVTHDIALDHR 96
+ +QL +GL ++ + ++ I +I LDHR
Sbjct: 1141 YVVQLLEGLAYIHSQHILHRDIKPANILLDHR 1172
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 24.6 bits (51), Expect = 4.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -3
Query: 329 SERLGALLGPVAATTASVALLGIAHARSLPDAA 231
S ++G+L ++T SVA + +A + LPDA+
Sbjct: 321 SLKIGSLDSKQPSSTKSVAEVKVADEKQLPDAS 353
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.2 bits (50), Expect = 6.3
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Frame = +3
Query: 135 VHLDATGDVNEAIKELNGMMVDGQPM---KVQLSTSRVRQRPGMG-----DPEQ-CYRCG 287
V D+ +N AIK ++ ++ + + L +++RQ + D Q C CG
Sbjct: 256 VTADSEDKINHAIKLIDNVIQTAASVPEGQNDLKRNQLRQLATLNGTLRDDENQVCQNCG 315
Query: 288 RGGHWSKECPKALGPDRN 341
GH +CP+ + N
Sbjct: 316 NVGHRRFDCPERINHTMN 333
Score = 23.8 bits (49), Expect = 8.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 273 CYRCGRGGHWSKECP 317
C CG GH +++CP
Sbjct: 336 CRHCGSIGHIARDCP 350
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 23.8 bits (49), Expect = 8.3
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Frame = -1
Query: 352 SRKPLRSGPSALGHSLDQWPPRPHR*HCSGSPMPGRCRTRLVDSC-TFMGCPSTIMP-FN 179
S KP RS P+A G + PP P P PG T + + F S MP
Sbjct: 111 SEKPRRSLPTAAGQNNIGSPPTP------PGPFPGGLSTDIQEKLKAFHASRSKSMPEVV 164
Query: 178 SLMASFTSPVASKCTKP*LRTISHSTTVPNFWNSSRTSGARVLSVRLP 35
+ ++S T+P+ + S +PN + R S + V S +P
Sbjct: 165 NKISSPTTPIVGMGQR-------GSYPLPNSQLAGRLSNSPVKSPNMP 205
>SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 23.8 bits (49), Expect = 8.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 209 HEGAAVDEPRPAATGH 256
H+G A+ E PA TGH
Sbjct: 54 HDGVALYEKAPAYTGH 69
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 23.8 bits (49), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 121 RTISHSTTVPNFWNSSRTSGARVLSVRLP 35
RT S S T+P++ N + T LS RLP
Sbjct: 164 RTTS-SPTIPSYANRTHTDSPTSLSHRLP 191
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 23.8 bits (49), Expect = 8.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 207 VARPPSCHSTL*WPRSRHPSRPNVRSHSYARYRTRPPSR--TSGTARGPPA 61
V+RP S HSTL + S NV + + PP R TS T+ PP+
Sbjct: 520 VSRPSSSHSTLSYANDSASSAVNVAGET----GSLPPLREQTSITSGVPPS 566
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,573,988
Number of Sequences: 5004
Number of extensions: 32186
Number of successful extensions: 183
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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