Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_I07
(364 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.84
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.84
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.84
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.84
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.84
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.84
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 0.84
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 0.84
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 23 1.1
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 1.5
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 22 1.9
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 21 4.5
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 5.9
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 20 7.8
AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter... 20 7.8
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.84
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 336 GLVRAPWGTPWTSGRHDRIGSTARDRP 256
G +R+ +GTP ++GR + T+ P
Sbjct: 364 GYIRSAFGTPISTGRPATVEDTSASLP 390
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.84
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 336 GLVRAPWGTPWTSGRHDRIGSTARDRP 256
G +R+ +GTP ++GR + T+ P
Sbjct: 364 GYIRSAFGTPISTGRPATVEDTSASLP 390
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.84
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 336 GLVRAPWGTPWTSGRHDRIGSTARDRP 256
G +R+ +GTP ++GR + T+ P
Sbjct: 364 GYIRSAFGTPISTGRPATVEDTSASLP 390
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.84
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 336 GLVRAPWGTPWTSGRHDRIGSTARDRP 256
G +R+ +GTP ++GR + T+ P
Sbjct: 364 GYIRSAFGTPISTGRPATVEDTSASLP 390
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.84
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 336 GLVRAPWGTPWTSGRHDRIGSTARDRP 256
G +R+ +GTP ++GR + T+ P
Sbjct: 364 GYIRSAFGTPISTGRPATVEDTSASLP 390
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.84
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 336 GLVRAPWGTPWTSGRHDRIGSTARDRP 256
G +R+ +GTP ++GR + T+ P
Sbjct: 364 GYIRSAFGTPISTGRPATVEDTSASLP 390
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 0.84
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 336 GLVRAPWGTPWTSGRHDRIGSTARDRP 256
G +R+ +GTP ++GR + T+ P
Sbjct: 432 GYIRSAFGTPISTGRPATVEDTSASLP 458
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 0.84
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 336 GLVRAPWGTPWTSGRHDRIGSTARDRP 256
G +R+ +GTP ++GR + T+ P
Sbjct: 432 GYIRSAFGTPISTGRPATVEDTSASLP 458
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 23.0 bits (47), Expect = 1.1
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = -2
Query: 198 PPSCHSTL*WPRSRHPSRPNVRSHSYARYRTRPPSRTSGTARGPP 64
PPS H P HP R + H + + T G GPP
Sbjct: 313 PPSYHPHQHHPSQYHPHRGSSPHHQHGNH-------TMGPTMGPP 350
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 1.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -3
Query: 218 HLHGLPVHHHA 186
H+H P HHH+
Sbjct: 425 HIHATPHHHHS 435
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 22.2 bits (45), Expect = 1.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 171 IKELNGMMVDGQPMKVQLSTSR 236
++ LNG+ G+P +QL + R
Sbjct: 315 LRGLNGLEFAGRPQNLQLQSQR 336
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 21.0 bits (42), Expect = 4.5
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +3
Query: 273 CYRCGRGGHWSKECPK 320
C CG H K CPK
Sbjct: 78 CGACGDIAHTVKYCPK 93
Score = 20.6 bits (41), Expect = 5.9
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = +3
Query: 15 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNEAIK 176
PT +F N + A + L + V C ++R Y A GD+ +K
Sbjct: 37 PTECVFCRN-NGEEEAYYRKHLLKDADGRVSCPVLRAYTCPICGACGDIAHTVK 89
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 20.6 bits (41), Expect = 5.9
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = -3
Query: 290 TTASVALLGIAHARSLPDAARRQLHLHGLPVHHH 189
TTA+ A A L Q H H HHH
Sbjct: 117 TTATAAATATTTATGLIKQETLQRHHHLQNHHHH 150
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 20.2 bits (40), Expect = 7.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 30 FVGNLTDKTRAP 65
F+GNL +TR P
Sbjct: 479 FMGNLLQETRTP 490
>AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter
Am-EAAT protein.
Length = 543
Score = 20.2 bits (40), Expect = 7.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 12 TPTTKIFVGNLTDKTRAPEVRELF 83
TP I D+T APE ++F
Sbjct: 516 TPLENILESCQQDETHAPEKTKIF 539
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,380
Number of Sequences: 438
Number of extensions: 2584
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 8556345
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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