Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I06
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   2.9  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    24   5.0  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    24   5.0  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    23   6.7  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    23   6.7  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    23   8.8  

>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 242 IHLSRSLREARKRFIKV 192
           IHL R L++ R+RF K+
Sbjct: 611 IHLERCLKDLRERFAKI 627


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 272 YFISNNSVPNIHLSRSLREARKRF 201
           YF+ NN   N+H+   L++ +++F
Sbjct: 505 YFLINNFNDNLHIIELLQKDKRKF 528


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 6   RTICAFRGYVQTPYWIHPP 62
           R +C   GYV  PY  +PP
Sbjct: 714 RKLCGRSGYVIQPYLDYPP 732


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 116 YKDRFLITLISNNNIFVTRQEKKMSIPL 199
           Y  +  +T+I  NN++  RQ ++  IP+
Sbjct: 190 YSYKISVTVIRANNVYGPRQYEEKLIPM 217


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 128 FLITLISNNNIFVTRQEKKMS 190
           FL+ LIS  N+F+T  +++++
Sbjct: 863 FLVQLISTLNLFITSSKREIA 883


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 102 TSVTLYSHLVYYKMAGESNMASVHN 28
           T   LYSH V  KM  E ++ S  N
Sbjct: 736 TQTELYSHFVGRKMDREQDLPSATN 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,220,640
Number of Sequences: 5004
Number of extensions: 21495
Number of successful extensions: 39
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)