Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I06
         (288 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016           29   0.80 
02_02_0326 - 8976913-8976963,8977453-8977521,8978247-8978438,897...    27   2.4  
08_02_0239 - 14680013-14680291,14680560-14680649,14680654-146810...    26   5.6  
04_03_0832 + 20139299-20139520,20139822-20141114,20142697-201428...    25   7.4  

>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
          Length = 441

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 48  WIHPPFCSTRDAST 89
           W+HPPF + RDA+T
Sbjct: 121 WLHPPFAAHRDAAT 134


>02_02_0326 -
           8976913-8976963,8977453-8977521,8978247-8978438,
           8978597-8978764,8978902-8979513,8979765-8979815
          Length = 380

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 92  RCTRISCTTKWRVNPIWRLYITSKCANGP 6
           RC   +C      +   RLY TS CAN P
Sbjct: 26  RCLMSTCPLSKATDDSQRLYATSSCANVP 54


>08_02_0239 -
           14680013-14680291,14680560-14680649,14680654-14681047,
           14682052-14682137,14683327-14683465,14683470-14683585
          Length = 367

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 163 CHATRKKNVHTFINLLRASRRDRLKCI 243
           C+AT  +  H  +N++ A   D +KC+
Sbjct: 152 CNATVNRYFHKVLNVVHAMAADIIKCV 178


>04_03_0832 +
           20139299-20139520,20139822-20141114,20142697-20142822,
           20143322-20143442,20144213-20144481
          Length = 676

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 10  PFAHLEVMYRRHIGFTRHFVVHEMRVQRHRRIL 108
           P A  + M+R  +G   H  +  +R +R RR++
Sbjct: 321 PAAGFQGMHRSFVGLKNHLDLRLLRARRRRRLV 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,259,071
Number of Sequences: 37544
Number of extensions: 114756
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)