Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I06
         (288 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   1.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   4.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   5.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   5.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    19   9.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   9.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 116 YKDRFLITLISNNNIFVTRQEKKMSIPL*TFYELH 220
           +KD F + ++   N  + R E    +PL   Y LH
Sbjct: 355 FKDLFFLQILDLRNNSIDRIESNAFLPL---YNLH 386


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 48  WIHPPFCSTRDASTTSQTYFIFS 116
           W+ P +   R   T SQT  I+S
Sbjct: 344 WLDPEYPMIRVHKTQSQTIDIYS 366


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 168 RDKKKKCPYLYKPFT 212
           R K+K C Y Y P T
Sbjct: 382 RGKEKTCYYPYHPST 396


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 168 RDKKKKCPYLYKPFT 212
           R K+K C Y Y P T
Sbjct: 382 RGKEKTCYYPYHPST 396


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 85  VQRHRRILFLVQRPLFNHSY 144
           + ++ RI+F V   LFN  Y
Sbjct: 464 IDKYSRIIFPVSFMLFNAIY 483


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 157 YICHATRKKNV 189
           Y CHA R ++V
Sbjct: 380 YTCHAVRNQDV 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,155
Number of Sequences: 438
Number of extensions: 1561
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)