Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I03
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    32   0.036
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    28   0.59 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   0.77 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   2.4  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    26   2.4  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   3.1  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   3.1  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   3.1  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   4.1  
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ...    25   5.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   7.2  
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    24   7.2  
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    24   9.5  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    24   9.5  
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar...    24   9.5  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.5  

>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 31.9 bits (69), Expect = 0.036
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 210 MKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQEHSKKTKTD 347
           MKQPSN D+   + +  D+ +    ++   P  K D+ HS  +KTD
Sbjct: 520 MKQPSN-DAESPSDILADIKKQRLVEQGCEPIRKTDESHSPNSKTD 564


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +3

Query: 99  NRTYNK*IMEPLSPWKKPNEVMQLHRLKKRKKALQ 203
           +R  ++ ++E  SP   P E ++L++ KKR++A+Q
Sbjct: 253 HRFRSRAVLEFGSPLSIPTEYVELYKAKKRREAIQ 287


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 27.5 bits (58), Expect = 0.77
 Identities = 22/80 (27%), Positives = 38/80 (47%)
 Frame = +3

Query: 114 K*IMEPLSPWKKPNEVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKR 293
           K +M P    ++ N+V  L+ L K+ + + E  K   N+         L  ++ L  D +
Sbjct: 767 KTMMTPFVLRRRKNQV--LNDLPKKTQII-EHCKLSENQLEIYNRYAALQKNQQLRRDDK 823

Query: 294 KNPFSKNDQEHSKKTKTDIH 353
           +N  SKND+E   K+ +  H
Sbjct: 824 RNKRSKNDEESDGKSLSAGH 843


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 180 KKRKKALQERMKQPSNEDSCKQTTV-QLDLSRILTGDKRKNPFSKNDQEHSKK 335
           K+R+K L+++ ++   E   ++  + + +  RIL   KR+    K ++E  ++
Sbjct: 669 KEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRR 721


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
 Frame = +3

Query: 156 EVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRI---LTGDKRKNPF--SKNDQ 320
           E MQ  + K+++ AL+   +   NE+  K+T +  D       L   K+++ F  SK + 
Sbjct: 132 EAMQ-QKKKEKRAALKHYREASDNEEDLKETDLYGDRDSFQSRLKQKKQRSEFRASKREM 190

Query: 321 EHSKKTKTDIHPTLDESNDKTL 386
           E  ++ + ++   ++E N K L
Sbjct: 191 ERLERDQ-ELRNKIEERNKKEL 211


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 129 PLSPWKKPNEVMQLHRLKKRKKALQE 206
           PL+ WK    V +LHR + R  AL E
Sbjct: 425 PLAFWKNERVVYELHRDENRIPALPE 450


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 156 EVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSK-NDQEHSK 332
           E   L    K KK+ Q+R K        ++      +S +LTG  R  PF++ N ++  K
Sbjct: 335 EKKSLQSDSKNKKS-QKRKKDEDLRKEAEENVNSRVISAVLTGVNRAYPFAEVNSEKFDK 393

Query: 333 KTKT 344
              T
Sbjct: 394 HMNT 397


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +3

Query: 144  KKPNEVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQE 323
            K P  + ++H   +RKKAL E  ++PS+     +   + D SR + G     PFS +D  
Sbjct: 1254 KGPKTIAEIHEEAERKKALAE-SQRPSSGRMHGRDMNRGD-SR-MGGRGSNPPFSSSDWS 1310

Query: 324  HSK 332
            ++K
Sbjct: 1311 NNK 1313


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 129 PLSPWKKPNEVMQLHRLKKRKKALQERMK 215
           PL    +P E+  ++  KKRK+AL+  +K
Sbjct: 311 PLKDNVRPREIGNVNNPKKRKRALELALK 339


>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 368 FIKCWMNISFGLLR 327
           FI+CW N+   LLR
Sbjct: 194 FIRCWTNVRMDLLR 207


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 283 PVNILDKSNCTVVCLHESSFEGCFMRSCSA 194
           P   ++  NC  +   E+SF+ CF +  S+
Sbjct: 725 PTLEINTFNCPAISYFETSFDECFSKFASS 754


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 258 LDLSRILTGDKRKNPFSKNDQEHSKKTKTDIHPT--LDESNDK 380
           L+   +   +KR    + +D ++ KK K D H T  LDE  D+
Sbjct: 96  LEAYELALKEKRLKLPNVSDVDNRKKAKIDAHDTTPLDEEKDE 138


>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 356 WMNISFGLLRMFLIILRKWILSFVPSQYSR 267
           W ++ FG +   +IIL   ILS +PS  +R
Sbjct: 247 WRSL-FGFISDIVIILYSSILSILPSSITR 275


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 144 KKPNEVMQLHRLKKRKKALQERMKQPSNEDSCKQTTV--QLDLS 269
           KK  E  +  R K RKK  Q + K  + ED+   + V  ++D+S
Sbjct: 180 KKEKEREKKEREKLRKKQQQAKKKGSTGEDTLASSEVSSEVDIS 223


>SPAC1071.09c |||DNAJ domain protein, DNAJC9
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 165 QLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRI----LTGDKRKNPFSKNDQEHSK 332
           +L R   RKKALQ    +  +E+   +  ++ D   I    L+  KR+  + K  Q   +
Sbjct: 45  ELIRRAYRKKALQHHPDRIHDEEKKVEARIEFDKVAIAYGVLSDKKRRKHYDKTGQ--LR 102

Query: 333 KTKTDI 350
           +T  DI
Sbjct: 103 ETDADI 108


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 292 LLSPVNILDKSNCTVVCLHESSFEGCFMRSCSAFFRFFNLCSCITSFGFFHG 137
           LL+P   L +SN  +   HE S  G    S + F     L S + S+  F G
Sbjct: 420 LLNPNFELPESN-GIEFAHEDSVLGHSKPSLTEFHAILGLYSLVISYNHFEG 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,586,866
Number of Sequences: 5004
Number of extensions: 32247
Number of successful extensions: 116
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)