Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_I03
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0084 - 17788077-17789240 34 0.046
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 0.99
06_02_0334 + 14582925-14583404,14583533-14583540,14584070-145845... 29 1.7
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 28 2.3
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073... 27 4.0
08_02_1628 + 28363476-28363517,28363624-28363791,28363863-283639... 27 4.0
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 27 4.0
05_01_0267 + 2050854-2051682,2051864-2051921,2052518-2052608 27 4.0
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 27 4.0
06_01_0785 - 5873244-5873357,5873458-5873562,5874333-5874424,587... 27 5.3
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 27 7.0
09_02_0025 + 3088084-3088319,3089582-3089627,3089720-3090475 26 9.2
05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889 26 9.2
04_01_0158 - 1801724-1801951,1802047-1803078 26 9.2
>05_04_0084 - 17788077-17789240
Length = 387
Score = 33.9 bits (74), Expect = 0.046
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 141 WKKPNEVMQL--HRLKKRKKALQE-RMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSK 311
W P E + R+K +KKAL+E + Q + ED K T + DL+R ++ + K
Sbjct: 252 WVDPKEARRRKKRRIKNKKKALEEAKRMQQAKEDPEKATKLAWDLARRRAAGEKVHDDPK 311
Query: 312 NDQEHSKKTK 341
+E KK K
Sbjct: 312 LIKESMKKDK 321
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 0.99
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 279 SIF*INLTVQWFVYMSLHLRVVSCVPAVLSFVFSTCAVAL 160
S F + V WF+Y L V +P VL FVF +AL
Sbjct: 189 SFFLVLSAVIWFLYGLLKKDVFVALPNVLGFVFGVAQMAL 228
>06_02_0334 +
14582925-14583404,14583533-14583540,14584070-14584561,
14584733-14585087,14585338-14585505
Length = 500
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +3
Query: 189 KKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQEHSKKTKTDI 350
KK+ Q +K+PS+ K+ LSR+ G +P S++D E S ++ D+
Sbjct: 142 KKSEQPALKKPSSAPKSKKVNCMRRLSRLFKGS--GSPSSRHD-ESSTRSSADV 192
>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 372 LIHQVLDEYQFWSS*NVLDHSSKMDSF 292
L+ Q +QFWSS + DHS+ ++ F
Sbjct: 2194 LVKQTTSPHQFWSSLSSSDHSAFLEGF 2220
>10_08_1040 +
22503641-22503681,22503838-22504299,22506952-22507361,
22507484-22507640,22507718-22507937,22508053-22508106,
22508193-22508272,22508359-22508636,22509193-22509515,
22509590-22509853,22510453-22510860
Length = 898
Score = 27.5 bits (58), Expect = 4.0
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +3
Query: 123 MEPLSPWKKPN--EVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRK 296
++P S K N + L RLKK + +Q+ K+P + C + ++ + K
Sbjct: 748 VKPASDAKTSNLSDQQVLRRLKKVRPEIQQHNKRPEDYGHCSVPSGRMSM-------KNL 800
Query: 297 NPFSKNDQEHSKKTKTDIHPTLDESN 374
N S +EH + + + DES+
Sbjct: 801 NSSSSCGEEHWRMKRRQLETQQDESS 826
>08_02_1628 +
28363476-28363517,28363624-28363791,28363863-28363937,
28364018-28364070,28364559-28364709,28365079-28365261,
28366110-28366236,28366731-28366831,28367156-28367294,
28367359-28367420,28367702-28367754,28368266-28368290
Length = 392
Score = 27.5 bits (58), Expect = 4.0
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 153 NEVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQ-LDLSRILTGDKRKNPFSKNDQEHS 329
N + RL R + + + P + K+ +D S IL ++ +PF+ ++
Sbjct: 53 NALTAAARLGLRPRIISKVSNDPQGRNILKELQDDGVDTSHILVAEEGNSPFTYIIVDNQ 112
Query: 330 KKTKTDIH 353
KT+T IH
Sbjct: 113 TKTRTCIH 120
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 213 KQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQE--HSKKTKTDI 350
+ P++E + K+ T+QLDL + GD+ K+P + Q +K K +I
Sbjct: 553 RMPADEVAPKKLTLQLDLEKPSLGDE-KSPSERRPQPALQQQKPKNEI 599
>05_01_0267 + 2050854-2051682,2051864-2051921,2052518-2052608
Length = 325
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 213 SCVPAVLSFVFSTCAVALLHLVFS 142
SCVP +SFV TCA A + V+S
Sbjct: 94 SCVPDPVSFVCPTCADAAVGRVYS 117
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 159 VMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQ 257
VM+ L KRKK L+ER P+ + S K ++
Sbjct: 1088 VMEFQALVKRKKFLEERASNPAADLSYKNVRLE 1120
>06_01_0785 -
5873244-5873357,5873458-5873562,5874333-5874424,
5874525-5874594,5875080-5875202,5875287-5875372,
5875547-5875648,5875874-5876096,5876217-5876282,
5876407-5876497,5876574-5876701,5877734-5877749,
5878171-5878318,5878440-5878511,5878586-5878690,
5879122-5879291,5880093-5880424
Length = 680
Score = 27.1 bits (57), Expect = 5.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 307 ENGFFLLSPVNILDKSNCTVV 245
EN ++ SP+N +DK C V+
Sbjct: 580 ENAYYERSPINFVDKFTCPVI 600
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 279 TGDKRKNPFSKNDQEHSKKTK 341
TG KRKNP SK+ ++ S+ K
Sbjct: 646 TGRKRKNPLSKSGKKSSRMLK 666
>09_02_0025 + 3088084-3088319,3089582-3089627,3089720-3090475
Length = 345
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 339 KTDIHPTLDESNDKTL 386
KTD+HP L+E DK L
Sbjct: 69 KTDVHPDLEEWTDKRL 84
>05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889
Length = 493
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 282 GDKRKNPFSKNDQEHSKKTKTDIHPTLDESNDKTL 386
G ++KN + Q+H K+ HPT D + KTL
Sbjct: 411 GRRKKN---RGKQQHVLSAKSSEHPTADFTGPKTL 442
>04_01_0158 - 1801724-1801951,1802047-1803078
Length = 419
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 324 VLDHSSKMDSFFCPQS 277
VL HS +MDS F PQ+
Sbjct: 2 VLQHSDRMDSLFSPQT 17
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,102,625
Number of Sequences: 37544
Number of extensions: 171191
Number of successful extensions: 418
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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