Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I03
         (389 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC029585-1|AAH29585.2|  148|Homo sapiens chromosome 19 open read...    29   4.0  
AK091839-1|BAC03759.1|  557|Homo sapiens protein ( Homo sapiens ...    29   5.3  
AK055159-1|BAB70865.1|  177|Homo sapiens protein ( Homo sapiens ...    29   7.1  
BC055312-1|AAH55312.1|  413|Homo sapiens MAP1A protein protein.        28   9.3  
AK124477-1|BAC85860.1|  197|Homo sapiens protein ( Homo sapiens ...    28   9.3  

>BC029585-1|AAH29585.2|  148|Homo sapiens chromosome 19 open reading
           frame 34 protein.
          Length = 148

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 138 PWKKPNEVMQLHRLKKRKKALQERMKQPS 224
           PW+KP    +LHR + R +   E   +PS
Sbjct: 26  PWQKPTSPRRLHRRRPRGQPASENAAEPS 54


>AK091839-1|BAC03759.1|  557|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34520 fis, clone HLUNG2006935, weakly similar to
           CALCYPHOSINE. ).
          Length = 557

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 186 RKKALQERMKQPS--NEDSCKQTTVQLDLSRILTGDKRKN 299
           RKK LQ+R    S  N++SC     +LDL  ++  D   N
Sbjct: 41  RKKPLQQRWTSESWTNQNSCPPVVPRLDLGSLVDSDDEDN 80


>AK055159-1|BAB70865.1|  177|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30597 fis, clone BRAWH2009261, weakly similar to
           TLM PROTEIN. ).
          Length = 177

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 250 VVCLHESSFEGCFMRSCSAFFRFF 179
           ++ +H SSFE C  RS + F  FF
Sbjct: 123 LMAIHMSSFEKCLYRSLALFLNFF 146


>BC055312-1|AAH55312.1|  413|Homo sapiens MAP1A protein protein.
          Length = 413

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 180 KKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQEHSKKTK 341
           K  KKA +   K P  E   K   V+ + S  L  +KRK    K  ++H KK K
Sbjct: 358 KTEKKAKESSEKPP--ERPAKPERVKTESSEALKAEKRKLIKDKVGKKHQKKKK 409


>AK124477-1|BAC85860.1|  197|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42486 fis, clone BRACE2032385. ).
          Length = 197

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 201 AVLSFVFSTCAVALLHLVFSMVKVVPL 121
           A+ +F+F+ CA   L  +FS V VVPL
Sbjct: 2   ALNNFLFAQCACYFLAFLFSFVVVVPL 28


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,096,759
Number of Sequences: 237096
Number of extensions: 999053
Number of successful extensions: 2561
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2553
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2698607930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)