Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_I03
(389 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical pr... 31 0.22
Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical p... 31 0.22
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 31 0.38
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 31 0.38
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 31 0.38
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 31 0.38
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 31 0.38
AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical ... 30 0.50
Z48543-2|CAA88433.2| 478|Caenorhabditis elegans Hypothetical pr... 29 1.5
U41279-6|AAK31423.1| 321|Caenorhabditis elegans Helix loop heli... 29 1.5
U41279-4|AAK31421.1| 313|Caenorhabditis elegans Helix loop heli... 29 1.5
Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical pr... 28 2.7
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr... 28 2.7
AL031630-14|CAA20993.1| 185|Caenorhabditis elegans Hypothetical... 28 2.7
Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z79755-7|CAB02103.1| 466|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z73972-10|CAA98263.2| 388|Caenorhabditis elegans Hypothetical p... 27 3.6
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe... 27 3.6
AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical... 27 3.6
AL021474-8|CAA16310.2| 388|Caenorhabditis elegans Hypothetical ... 27 3.6
AF025460-4|AAB70987.1| 156|Caenorhabditis elegans Hypothetical ... 27 3.6
Z78539-7|CAB01726.2| 560|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z69885-3|CAA93755.1| 278|Caenorhabditis elegans Hypothetical pr... 27 6.2
U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical pr... 27 6.2
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q... 27 6.2
Z81553-7|CAB04496.4| 797|Caenorhabditis elegans Hypothetical pr... 26 8.2
Z81536-4|CAB04364.1| 310|Caenorhabditis elegans Hypothetical pr... 26 8.2
Z34801-3|CAA84327.1| 520|Caenorhabditis elegans Hypothetical pr... 26 8.2
U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical pr... 26 8.2
U41994-12|AAK31522.1| 118|Caenorhabditis elegans Hypothetical p... 26 8.2
U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family ... 26 8.2
AC024881-7|AAK71417.1| 310|Caenorhabditis elegans Serpentine re... 26 8.2
>Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 31.5 bits (68), Expect = 0.22
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 174 RLKKRKKALQERMKQPSNEDSCKQTTVQLDLSR-ILTGDKRKNPFSKNDQEHSKKTKTDI 350
+LKK KK ++E +Q E+ ++ + + + L +K SK D KKTK +
Sbjct: 58 KLKKDKKKVEELKRQHKLEEEAEKLYKEEKIRKEALDKIVKKEKLSKED----KKTKNER 113
Query: 351 HPTLDESNDKT 383
H LD+ DK+
Sbjct: 114 HKYLDKYRDKS 124
>Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 31.5 bits (68), Expect = 0.22
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 174 RLKKRKKALQERMKQPSNEDSCKQTTVQLDLSR-ILTGDKRKNPFSKNDQEHSKKTKTDI 350
+LKK KK ++E +Q E+ ++ + + + L +K SK D KKTK +
Sbjct: 58 KLKKDKKKVEELKRQHKLEEEAEKLYKEEKIRKEALDKIVKKEKLSKED----KKTKNER 113
Query: 351 HPTLDESNDKT 383
H LD+ DK+
Sbjct: 114 HKYLDKYRDKS 124
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 30.7 bits (66), Expect = 0.38
Identities = 16/72 (22%), Positives = 37/72 (51%)
Frame = +3
Query: 156 EVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQEHSKK 335
E ++L K + K +Q++ +QP E + VQL ++ + + F+ + ++ K+
Sbjct: 3743 EKVKLKTEKAKIKEIQQKPEQPKEEPIVHKDAVQLKTQQLPKTGIKGDHFTVDREKDLKE 3802
Query: 336 TKTDIHPTLDES 371
T + P ++E+
Sbjct: 3803 TPAVVKPVIEET 3814
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform b protein.
Length = 4203
Score = 30.7 bits (66), Expect = 0.38
Identities = 16/72 (22%), Positives = 37/72 (51%)
Frame = +3
Query: 156 EVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQEHSKK 335
E ++L K + K +Q++ +QP E + VQL ++ + + F+ + ++ K+
Sbjct: 3660 EKVKLKTEKAKIKEIQQKPEQPKEEPIVHKDAVQLKTQQLPKTGIKGDHFTVDREKDLKE 3719
Query: 336 TKTDIHPTLDES 371
T + P ++E+
Sbjct: 3720 TPAVVKPVIEET 3731
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 30.7 bits (66), Expect = 0.38
Identities = 16/72 (22%), Positives = 37/72 (51%)
Frame = +3
Query: 156 EVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQEHSKK 335
E ++L K + K +Q++ +QP E + VQL ++ + + F+ + ++ K+
Sbjct: 3981 EKVKLKTEKAKIKEIQQKPEQPKEEPIVHKDAVQLKTQQLPKTGIKGDHFTVDREKDLKE 4040
Query: 336 TKTDIHPTLDES 371
T + P ++E+
Sbjct: 4041 TPAVVKPVIEET 4052
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 30.7 bits (66), Expect = 0.38
Identities = 16/72 (22%), Positives = 37/72 (51%)
Frame = +3
Query: 156 EVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQEHSKK 335
E ++L K + K +Q++ +QP E + VQL ++ + + F+ + ++ K+
Sbjct: 3981 EKVKLKTEKAKIKEIQQKPEQPKEEPIVHKDAVQLKTQQLPKTGIKGDHFTVDREKDLKE 4040
Query: 336 TKTDIHPTLDES 371
T + P ++E+
Sbjct: 4041 TPAVVKPVIEET 4052
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 30.7 bits (66), Expect = 0.38
Identities = 16/72 (22%), Positives = 37/72 (51%)
Frame = +3
Query: 156 EVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQEHSKK 335
E ++L K + K +Q++ +QP E + VQL ++ + + F+ + ++ K+
Sbjct: 3676 EKVKLKTEKAKIKEIQQKPEQPKEEPIVHKDAVQLKTQQLPKTGIKGDHFTVDREKDLKE 3735
Query: 336 TKTDIHPTLDES 371
T + P ++E+
Sbjct: 3736 TPAVVKPVIEET 3747
>AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical
protein Y43C5A.4 protein.
Length = 218
Score = 30.3 bits (65), Expect = 0.50
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 210 MKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQEHSKKTKT 344
+ + E S K+ T + S+ TG K+KN +K KKT+T
Sbjct: 84 VNEDEKEKSSKRPTAKSKKSKKATGSKKKNKKTKKPDGSEKKTQT 128
>Z48543-2|CAA88433.2| 478|Caenorhabditis elegans Hypothetical
protein C18D1.2 protein.
Length = 478
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = -1
Query: 344 SFGLLRMFLIILRKWILSFVPSQYSR*I*LYSGLFT*VFI*GLFHAFLQCFLSFFQPVQL 165
S L +F++IL I+ F + R +Y+ F+ G+ ++FL C + PV +
Sbjct: 357 SMPYLGLFMLILSCSIIGFNCGGFFRCSAIYAAQHN-HFVMGM-NSFLNCLAALLAPVIV 414
Query: 164 HYFIWFFPW*KWF 126
+ F+ W +W+
Sbjct: 415 NIFVENDTWNEWY 427
>U41279-6|AAK31423.1| 321|Caenorhabditis elegans Helix loop helix
protein 27 protein.
Length = 321
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 216 QPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQEHSKKTKTD 347
Q S E+ Q V + +++TG ++ FS ND S + K D
Sbjct: 98 QKSEEEHISQEVVLFRIVKLVTGVNLESNFSSNDLSESTRRKFD 141
>U41279-4|AAK31421.1| 313|Caenorhabditis elegans Helix loop helix
protein 25 protein.
Length = 313
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 216 QPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQEHSKKTKTD 347
Q S E+ Q V + +++TG ++ FS ND S + K D
Sbjct: 90 QKSEEEHISQEVVLFRIVKLVTGVNLESNFSSNDLSESTRRKFD 133
>Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical
protein AH6.3 protein.
Length = 230
Score = 27.9 bits (59), Expect = 2.7
Identities = 22/88 (25%), Positives = 39/88 (44%)
Frame = +3
Query: 120 IMEPLSPWKKPNEVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKN 299
+ E P K + ++ + K+++K +E+ K E S +T + + + KN
Sbjct: 130 LTEEEKPDAKEKKEIEKEKTKEKEKT-KEKEKTQEKEKSKDETVPKQHAPSLKRQEGDKN 188
Query: 300 PFSKNDQEHSKKTKTDIHPTLDESNDKT 383
P N +TD PT+DE +KT
Sbjct: 189 PEITNP---IVTPETDEFPTIDEDAEKT 213
>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
protein C06E1.10 protein.
Length = 1148
Score = 27.9 bits (59), Expect = 2.7
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 19/97 (19%)
Frame = +3
Query: 147 KPNEVMQLHRLKKRK-KALQER--MKQPSNEDSCKQTTVQLDLSRI--------LTGDKR 293
K EV +L + KRK A+Q R +KQ E QLD S++ L+ +
Sbjct: 50 KEKEVAKLTKQAKRKLAAVQSRKALKQTQEELFAGLAEFQLDPSKLCQLSSSTKLSKEPE 109
Query: 294 KNP--------FSKNDQEHSKKTKTDIHPTLDESNDK 380
K P FS + +K+T+ D +PT DES+ +
Sbjct: 110 KAPVFPEKLKVFSGKTKTEAKRTQQDYYPTDDESSSE 146
>AL031630-14|CAA20993.1| 185|Caenorhabditis elegans Hypothetical
protein Y38H6C.15 protein.
Length = 185
Score = 27.9 bits (59), Expect = 2.7
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = +3
Query: 144 KKPNEVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQE 323
KK V + +K +K +E ++P ++ K+ TV + S++ GDK +
Sbjct: 99 KKKTTVSSEDKPEKPEKLTEE--EKPKEKEKAKEKTVPVQ-SKLREGDKNAVV-----TD 150
Query: 324 HSKKTKTDIHPTLDESNDK 380
+TD +PTL+E DK
Sbjct: 151 PIVTPETDEYPTLEEDGDK 169
>Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/88 (20%), Positives = 42/88 (47%)
Frame = +3
Query: 120 IMEPLSPWKKPNEVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKN 299
+ + + W+ +E+ +L +K +++RM+Q + + +T L L+ +++ +
Sbjct: 58 LRDQVKNWQNASEIKDKDKLNSYRKLIEQRMEQFKDVERENKTKPHSKLG--LSAEEKLD 115
Query: 300 PFSKNDQEHSKKTKTDIHPTLDESNDKT 383
P K E + I +L+E D+T
Sbjct: 116 PKEKEKAETMDWIQHQIR-SLNEEVDRT 142
>Z79755-7|CAB02103.1| 466|Caenorhabditis elegans Hypothetical
protein F43G9.10 protein.
Length = 466
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 144 KKPNEVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKN 299
KK + + K+ L E++ Q ++T ++DLS +LT D+ +N
Sbjct: 250 KKIEDEKRAEERKRESAKLVEKVLQEEEAAEKRKTEDRVDLSSVLTDDETEN 301
>Z73972-10|CAA98263.2| 388|Caenorhabditis elegans Hypothetical
protein F15H10.4 protein.
Length = 388
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/46 (21%), Positives = 25/46 (54%)
Frame = -3
Query: 261 LTVQWFVYMSLHLRVVSCVPAVLSFVFSTCAVALLHLVFSMVKVVP 124
LT+ + V + + + ++ CVP + + S + L++ F ++ +P
Sbjct: 200 LTIIFRVLIGILIGIIVCVPFAIGSIVSGSVLMFLYMGFLAIRTIP 245
>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
defective protein 45 protein.
Length = 1076
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/67 (19%), Positives = 29/67 (43%)
Frame = +3
Query: 147 KPNEVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQEH 326
+P E+ ++HR KK + +E ++ E + T Q ++ K +N +
Sbjct: 572 RPTEIERIHRRKKMLENYKENWERVKAEKTAAAATEQAKREEAARAEEMKRLDEQNKESE 631
Query: 327 SKKTKTD 347
K+ + +
Sbjct: 632 RKRKQAE 638
>AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/88 (20%), Positives = 42/88 (47%)
Frame = +3
Query: 120 IMEPLSPWKKPNEVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKN 299
+ + + W+ +E+ +L +K +++RM+Q + + +T L L+ +++ +
Sbjct: 58 LRDQVKNWQNASEIKDKDKLNSYRKLIEQRMEQFKDVERENKTKPHSKLG--LSAEEKLD 115
Query: 300 PFSKNDQEHSKKTKTDIHPTLDESNDKT 383
P K E + I +L+E D+T
Sbjct: 116 PKEKEKAETMDWIQHQIR-SLNEEVDRT 142
>AL021474-8|CAA16310.2| 388|Caenorhabditis elegans Hypothetical
protein F15H10.4 protein.
Length = 388
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/46 (21%), Positives = 25/46 (54%)
Frame = -3
Query: 261 LTVQWFVYMSLHLRVVSCVPAVLSFVFSTCAVALLHLVFSMVKVVP 124
LT+ + V + + + ++ CVP + + S + L++ F ++ +P
Sbjct: 200 LTIIFRVLIGILIGIIVCVPFAIGSIVSGSVLMFLYMGFLAIRTIP 245
>AF025460-4|AAB70987.1| 156|Caenorhabditis elegans Hypothetical
protein F53A3.1 protein.
Length = 156
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 257 LYSGLFT*VFI*GLFHAFLQCFLSFFQPVQLHYFIWFF 144
+Y+ + T F+ LF++F L FF+ +LH+ + F
Sbjct: 39 MYNAILTFSFL-ALFYSFFTILLRFFELTELHFMSFNF 75
>Z78539-7|CAB01726.2| 560|Caenorhabditis elegans Hypothetical
protein C31E10.5 protein.
Length = 560
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 105 TYNK*IMEPLSPWKKPNEVMQLHRLKKRKKALQE----RMKQPSNEDSCKQTTVQLDLSR 272
+Y + ++ L+ W ++MQ HR+++RK+ + R+KQ + + T + D+++
Sbjct: 461 SYVEDVLTKLTDWYWKADLMQYHRIEERKRLEKRRSDMRIKQRQEIKNAQLTRIIFDVNQ 520
Query: 273 IL 278
+
Sbjct: 521 TI 522
>Z69885-3|CAA93755.1| 278|Caenorhabditis elegans Hypothetical
protein T04C10.3 protein.
Length = 278
Score = 26.6 bits (56), Expect = 6.2
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +3
Query: 153 NEVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGD--KRKNPFSKNDQEH 326
N ++ +++ L + Q + +Q + DL I G+ + N K+D E
Sbjct: 162 NLAAEIRLIRQNFTDLLQDFFQKRRVEKLRQLVEEFDLVLITMGNIYSQLNDSMKSDLEA 221
Query: 327 SKKTKTDIHPTLDESNDKT 383
SKK KT + L + KT
Sbjct: 222 SKKQKTILDKKLSDLLQKT 240
>U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical
protein C32E12.1 protein.
Length = 552
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/64 (20%), Positives = 28/64 (43%)
Frame = +3
Query: 174 RLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQEHSKKTKTDIH 353
++KK KK + + K+P ++ S ++ + + D + D++ KK
Sbjct: 70 KIKKNKKDKKSKDKKPKDKKSKEKKPKAAKSKEVKSKDVKPKDVKSKDEKKKKKNSKGKK 129
Query: 354 PTLD 365
P+ D
Sbjct: 130 PSTD 133
>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform a protein.
Length = 1128
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 53 SLTETCFK*FLNLSTKSNLQ*VNNGTTFTMEKTK*SNATAQVEKTKESTAGT 208
SL E K + TKSN +NN F++ +NAT Q T+ +++ +
Sbjct: 983 SLAEPTHKLYAKTVTKSNRGLINNALQFSVFPGAVNNATRQATITQMASSSS 1034
>Z81553-7|CAB04496.4| 797|Caenorhabditis elegans Hypothetical
protein F56H6.7 protein.
Length = 797
Score = 26.2 bits (55), Expect = 8.2
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -3
Query: 348 YQFWSS*NVLDHSSKMDSFFCPQSIF*INLTVQWFVYMS---LHLR--VVSCVPA 199
Y W+S N L H S + F P ++ T W ++S LHL VS VPA
Sbjct: 270 YSPWNSQNTLFHKSAFHTMFLPTTVS-FRTTDIWRSFISQKILHLSGLTVSFVPA 323
>Z81536-4|CAB04364.1| 310|Caenorhabditis elegans Hypothetical
protein F40D4.5 protein.
Length = 310
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 243 VYMSLHLRVVSCVPAVLSFVFSTC--AVALLHLVFSMVKVVPLFTY 112
++ + L+ C PA+ +VF C AV +L LV ++ +V T+
Sbjct: 69 LFTGIRLKRNVCFPAISIYVFFICFQAVMILMLVIDLLIIVFFTTF 114
>Z34801-3|CAA84327.1| 520|Caenorhabditis elegans Hypothetical
protein F59A2.2 protein.
Length = 520
Score = 26.2 bits (55), Expect = 8.2
Identities = 16/76 (21%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +3
Query: 162 MQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQEHS---K 332
+++ L++ KK Q+++ N+DS +++ T ++ N +++DQ+H+
Sbjct: 248 IKIKSLQQDKKE-QQQLITVDNDDSVDPRIREMEQRIQKTEEEWTNRINESDQQHAINLA 306
Query: 333 KTKTDIHPTLDESNDK 380
TK ++H L+ + +
Sbjct: 307 TTKAEMHAALENKDSE 322
>U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical
protein ZK354.3 protein.
Length = 312
Score = 26.2 bits (55), Expect = 8.2
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Frame = +3
Query: 129 PLSPWKKPNEVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLD-LSRILTGDKRKNPF 305
P KK E + + ++ KKA E+ K +D + T + D LS T + +
Sbjct: 64 PKGEEKKEEEKKEEEKKEEEKKADDEKKKTEEKDDKKSKKTEEKDKLSVKKTQETKSERK 123
Query: 306 SKNDQ-------EHSKKTKTDIHPTLDESNDK 380
K D+ E +K+ D DE DK
Sbjct: 124 DKKDERKEDDKKEENKEKSKDEEKKKDEVKDK 155
>U41994-12|AAK31522.1| 118|Caenorhabditis elegans Hypothetical
protein F59A6.2 protein.
Length = 118
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +3
Query: 204 ERMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFSKNDQEHSKKTKTDIHPTLDESNDK 380
E+M + E KQ+ + + R L KRK K +E +++K + DE ND+
Sbjct: 60 EKMASDAKERIQKQSDQKRE-ERKLAAQKRKELKQKQKEEKKEESKDEKDGADDEKNDE 117
>U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family
protein 1 protein.
Length = 652
Score = 26.2 bits (55), Expect = 8.2
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +3
Query: 129 PLSPWKKPNEVMQLHRLKKRKKALQERMKQPSNEDSCKQTTVQLDLSRILTGDKRKNPFS 308
PLSP+ E ++ +KRKK +E+ + ++ED+ L I T + +N
Sbjct: 538 PLSPFAPMVEDEEMSPSEKRKKRDEEKEEPETDEDNRWSKRTHALLQNIATKLENQNGQV 597
Query: 309 KNDQEHSKKTKTDI 350
+ D+ K T +
Sbjct: 598 ELDEMLKKGTSRKV 611
>AC024881-7|AAK71417.1| 310|Caenorhabditis elegans Serpentine
receptor, class sx protein3 protein.
Length = 310
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 243 VYMSLHLRVVSCVPAVLSFVFSTCAVALLHLVFSM-VKVVPLFT 115
++ + LR C PA+ ++F CA A++ L+ + + ++ FT
Sbjct: 70 LFTGIQLRRNICFPAISLYIFFICAQAVIMLMLVVDLFIIVFFT 113
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,725,658
Number of Sequences: 27780
Number of extensions: 183004
Number of successful extensions: 701
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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