Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I01
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    29   0.55 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   2.2  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   2.9  
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1...    26   3.9  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   5.1  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    25   6.8  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   6.8  
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.0  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    25   9.0  

>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 235 LQPATTRWRILLTVVSVCTAIAAYHWLMDPL 327
           LQ   T   IL  +  VC A+AA H+L  PL
Sbjct: 153 LQHRLTEGEILKILADVCDAVAAMHYLDPPL 183


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +1

Query: 34  FVEIYYCSSLVEIITFYYVDKYF-SCDQFVFE*VKCRWNKQLAMVRLF*NVDIDLKAFER 210
           F+E + C  L+  ++ YY  KYF   D   F  VK   N     V+L    +I       
Sbjct: 531 FIEYFLCDQLMNCLSVYY-SKYFEGKDSKKFTLVKHFMNSLFGRVKLNEQTEIIWHTRNY 589

Query: 211 RLTEVI 228
           R+ E +
Sbjct: 590 RIVEAL 595


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 205 ERRLTEVIACLQPATTRWRILLTVVSVCTAIAAYHWLMDPLTPV 336
           +RRL   I       + W  LL +V VC  +     L+ P+ PV
Sbjct: 10  QRRLVREINKFSSFESNWLFLLFLVRVCRQLKTVTVLIVPVLPV 53


>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 225 NSMSAASYNKMEDTADSGIRVHGNSSISLADGSPHTCSLSNSVIMESS-FLRFY 383
           N    +  N+ +   D+ I +    SI  +D  PHT SLS+    +SS FLR +
Sbjct: 61  NQRDFSRLNEFKGHFDTVIDIGCFHSILNSDHEPHTASLSHICHSDSSVFLRAF 114


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 197 FKSISTFQNNLTIASCLFQRH 135
           F ++ TF+NN+ I+S   Q+H
Sbjct: 364 FSTLQTFENNIQISSEYLQQH 384


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 207 ATSYRGNSMSAASYNKMEDTADS 275
           A+S  G S SAAS ++ ED++DS
Sbjct: 92  ASSAEGGSNSAASSSEEEDSSDS 114


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -2

Query: 305 YAAIAVHTDTTVSSILHLVVAGCRHAITSVRRRSNAF---KSISTFQNNLTIASCLFQRH 135
           Y      + T ++  ++L+++GC      VR+RS+ F   +  + +  +L I   LF   
Sbjct: 5   YKGFTFLSATWLAPNIYLLISGCLQYFYEVRKRSHYFHFRRFWTIWLKSLVIMVLLFTHI 64

Query: 134 FTYSNTN*SQEKYLS 90
           +    TN S    LS
Sbjct: 65  YDCYKTNESVWNVLS 79


>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 145 SSDILLIQIQIDHKKNIYLHNKKLLFQ 65
           S D+LLI+ ++      +LHN K+  Q
Sbjct: 44  SCDLLLIRGEVKENARCFLHNPKISHQ 70


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 118 QIDHKKNIYLHNKKLLFQPEMN 53
           + +H  N+Y   +  LF+PE+N
Sbjct: 903 EFEHLSNLYRDFRSKLFEPELN 924


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,239
Number of Sequences: 5004
Number of extensions: 38796
Number of successful extensions: 121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)