Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I01
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0518 + 29988613-29989193,29989596-29989622,29989759-299898...    29   3.0  
05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802     28   3.9  
11_06_0686 + 26280772-26281611                                         27   9.0  
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366...    27   9.0  

>01_06_0518 +
           29988613-29989193,29989596-29989622,29989759-29989891,
           29990006-29990240,29990524-29990566,29990672-29990952,
           29991293-29991423,29991812-29991946
          Length = 521

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 186 YRFKSI*ATSYRGNSMSAASYNKMEDTADSGIRVHGNSS 302
           YR K++   S RGN++ + S N ME+  + G  + G++S
Sbjct: 382 YRVKAV-VPSGRGNTLDSLSTNAMEEIDNPGSNLSGSAS 419


>05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802
          Length = 320

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +2

Query: 134 NVAGTNSLRW*DYFETLISI*KHLSDVLQ 220
           N AG NS    DYF TL    KHL +V Q
Sbjct: 171 NAAGNNSSTVADYFSTLGDDFKHLGEVYQ 199


>11_06_0686 + 26280772-26281611
          Length = 279

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 300 CYCRAHGYHCQQYPPSCCSW 241
           C+C A   H   Y PS C W
Sbjct: 237 CHCAAGDGHGHYYSPSSCQW 256


>04_04_1193 + 31634043-31634349,31634685-31634847,31635048-31636622,
            31636653-31637541,31639401-31641266
          Length = 1599

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 355  MTELERLQV*GDPSASDMLLLPCTRI 278
            +T L+RLQV G+P+ + + L  CT +
Sbjct: 1297 LTHLKRLQVQGNPNLTSLQLHSCTEL 1322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,908,665
Number of Sequences: 37544
Number of extensions: 235564
Number of successful extensions: 578
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)