Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I01
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.5  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   5.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   5.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   5.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   5.7  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   5.7  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   7.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -1

Query: 333 RCEGIHQPVICCYCRAHGYHCQQYPPSCCS 244
           +C   H+PV     + +  HC+ +  +C S
Sbjct: 109 KCPRRHRPVCASNGKIYANHCELHRAACHS 138


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 215 RRRSNAFKSISTFQNNLTIASCLFQRHFTYSNTN*SQEKY 96
           R RS   K IS+  NN   ++     +  Y+N N  + +Y
Sbjct: 73  RERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQY 112


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 215 RRRSNAFKSISTFQNNLTIASCLFQRHFTYSNTN*SQEKY 96
           R RS   K IS+  NN   ++     +  Y+N N  + +Y
Sbjct: 73  RERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQY 112


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 215 RRRSNAFKSISTFQNNLTIASCLFQRHFTYSNTN*SQEKY 96
           R RS   K IS+  NN   ++     +  Y+N N  + +Y
Sbjct: 73  RERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQY 112


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 215 RRRSNAFKSISTFQNNLTIASCLFQRHFTYSNTN*SQEKY 96
           R RS   K IS+  NN   ++     +  Y+N N  + +Y
Sbjct: 73  RERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQY 112


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -3

Query: 211 VAQMLLNRYQRFKIILPSQAVCSSDILLIQIQIDHK 104
           VA     R + ++ ++  +  CS + L+  I   HK
Sbjct: 25  VADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHK 60


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 324 GIHQPVICCYCR 289
           GI++P  C YCR
Sbjct: 1   GINEPQECPYCR 12


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,604
Number of Sequences: 438
Number of extensions: 2752
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)