Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H24
(480 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal pro... 175 2e-44
Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical pr... 42 2e-04
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 40 0.001
AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical ... 28 3.1
AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical ... 28 3.1
Z68751-5|CAA92975.1| 468|Caenorhabditis elegans Hypothetical pr... 27 5.3
AL032635-4|CAA21601.1| 140|Caenorhabditis elegans Hypothetical ... 27 5.3
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 27 7.0
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 27 7.0
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 27 7.0
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 27 9.3
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 27 9.3
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chlor... 27 9.3
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chlor... 27 9.3
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo... 27 9.3
>AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 24 protein.
Length = 131
Score = 175 bits (425), Expect = 2e-44
Identities = 81/116 (69%), Positives = 96/116 (82%), Gaps = 1/116 (0%)
Frame = +1
Query: 67 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 246
TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V FGF++ G
Sbjct: 6 TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65
Query: 247 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 411
GGKS GFAL+YDT+D AKKFEPK+RL R GL K ++P RKQRKERKNR KKVRGT
Sbjct: 66 GGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNRQKKVRGT 121
>Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical
protein T26G10.3 protein.
Length = 91
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 118 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 216
MV +V+ PG+PT K +IREK+A Y + PD +
Sbjct: 1 MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +1
Query: 262 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 390
GF L+YDT D A K++P+H + H R + +RKE++ R
Sbjct: 54 GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95
>AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical
protein C45H4.14b protein.
Length = 131
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 274 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 399
I LD KK E KHR A+ +K+ ++Q K+ K +KK
Sbjct: 17 ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 57
>AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical
protein C45H4.14a protein.
Length = 178
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 274 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 399
I LD KK E KHR A+ +K+ ++Q K+ K +KK
Sbjct: 64 ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 104
>Z68751-5|CAA92975.1| 468|Caenorhabditis elegans Hypothetical
protein T05E11.5 protein.
Length = 468
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 449 HHFLAAAPTLDFLVPRTFFILFL 381
HHF AA P L +LVP F+ L
Sbjct: 410 HHFKAAQPALLYLVPCCLFVPLL 432
>AL032635-4|CAA21601.1| 140|Caenorhabditis elegans Hypothetical
protein Y51A2A.6 protein.
Length = 140
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +1
Query: 229 FKTNFGGGKSTGFALI----YDTLDLAKKFEPKHRLARHGLYEKKRPTRKQR 372
F N GGGK+ GF+ + + KK H HG + RPTR R
Sbjct: 21 FVKNNGGGKNHGFSSASSSSSSSSEEGKKHGHGHHHHNHGRPSRPRPTRPPR 72
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 343 EKKRPTRKQRKERKNRMKKVR 405
E+KR +K+R ERK +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 343 EKKRPTRKQRKERKNRMKKVR 405
E+KR +K+R ERK +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 343 EKKRPTRKQRKERKNRMKKVR 405
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 343 EKKRPTRKQRKERKNRMKKVR 405
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 343 EKKRPTRKQRKERKNRMKKVR 405
E+KR +K+R ERK +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 343 EKKRPTRKQRKERKNRMKKVR 405
E+KR +K+R ERK +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 343 EKKRPTRKQRKERKNRMKKVR 405
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 343 EKKRPTRKQRKERKNRMKKVR 405
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +1
Query: 166 EIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYE 345
+IR+++ +MY V V F + +IYD + LAKK + +L + L E
Sbjct: 424 KIRKEIPEMYGFIQTPVTVKTFIVQMEEERRKKTKIIYDKVQLAKKKNKEIKLKKKVLEE 483
Query: 346 KKR 354
+++
Sbjct: 484 EEK 486
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 26.6 bits (56), Expect = 9.3
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = -2
Query: 239 FVLKPNTKTTSGVTLYILASFSRISVLLTVGFPGCKTSHTICLRANNLLVINLRVRIVAV 60
F++ T +T TL + +F SV+L F K +C+ ++ +I++ ++ V
Sbjct: 50 FIIATFTASTIISTL-LTGAFLVASVILWKRFKHMKFFWFLCMLTLSIFIISILNLLINV 108
Query: 59 PSLIFDYFRDFGVKTHA 9
P+ +F VK+ A
Sbjct: 109 PATLFSLLTKDFVKSEA 125
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 290 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 165
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 290 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 165
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 290 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 165
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 290 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 165
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform a protein.
Length = 1050
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 13 CVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 147
C+ +P+ RK S S A +RT F + + K+M+ D+ PGK
Sbjct: 41 CIVSPRFRKSSSRS---ALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83
>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform b protein.
Length = 1085
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 13 CVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 147
C+ +P+ RK S S A +RT F + + K+M+ D+ PGK
Sbjct: 41 CIVSPRFRKSSSRS---ALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83
>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
chloride channel CLH-4b protein.
Length = 1084
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 13 CVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 147
C+ +P+ RK S S A +RT F + + K+M+ D+ PGK
Sbjct: 41 CIVSPRFRKSSSRS---ALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,977,341
Number of Sequences: 27780
Number of extensions: 224130
Number of successful extensions: 717
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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