Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H23
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79752-3|CAB02078.2|  130|Caenorhabditis elegans Hypothetical pr...    56   2e-08
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>Z79752-3|CAB02078.2|  130|Caenorhabditis elegans Hypothetical
           protein D2005.3 protein.
          Length = 130

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 29/72 (40%), Positives = 46/72 (63%)
 Frame = +2

Query: 251 HSILSQALSQDARARLNTIKLSRPEKGAMVENMICRMAQMGQVQNRITEQELIQLLESVN 430
           + ++SQ L Q A  RL+ + +++PEK  MVE  +  MA+ GQ+  ++T+  L  L+E V+
Sbjct: 45  NGMISQILDQAAMQRLSNLAVAKPEKAQMVEAALINMARRGQLSGKMTDDGLKALMERVS 104

Query: 431 QQMPKSTSTVKF 466
            Q  K+TS VKF
Sbjct: 105 AQTQKATS-VKF 115


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
            F42C5.10 protein.
          Length = 1292

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 602  VMLKIPHDQS-HKYDLFKXRHHLR*RKY*QTARNHHHLSQ 486
            V+  IPHDQ  H YD    +HH     +   + + HH  Q
Sbjct: 927  VVYDIPHDQEHHHYDTVHVQHHHHHHYHTDGSEHVHHYHQ 966


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,955,400
Number of Sequences: 27780
Number of extensions: 213401
Number of successful extensions: 406
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)