Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H22
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    64   1e-11
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    60   1e-10
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    29   0.49 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   1.5  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   4.5  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   4.5  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   6.0  
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   7.9  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    25   7.9  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 28/41 (68%), Positives = 33/41 (80%)
 Frame = +1

Query: 10  KSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFFYRD 132
           K   SIGL+W+LLAREVLR+RG LSR   WDV+ DL+FYRD
Sbjct: 168 KGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRD 208


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 27/41 (65%), Positives = 32/41 (78%)
 Frame = +1

Query: 10  KSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFFYRD 132
           K   SIGL W+LLAREVLRLRG +SR   W+V+ DL+FYRD
Sbjct: 169 KGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRD 209


>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = -3

Query: 274 PVLHLQPMMQLVQHSQSIPHELAAALPLWERRQPVP*LVALPSHSLQGHDRRTSQRQHPN 95
           PV+ L P+ +L +H+++  + +  AL   ++ Q    LV   SH+ Q  + + +  +H N
Sbjct: 184 PVVPLLPLEELEEHNKTSQNRMEEALNYLKQLQKNEPLVHERSHTFQQTNPQNNFHRHTN 243

Query: 94  A 92
           +
Sbjct: 244 S 244


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 25  IGLMWWLLAREVLRLRGVLSRDQRWD 102
           IGL W L  REV R + + +R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 101 MLSLTCSSIVTLKRVRRKSNKLRNRLSS---LPKWKRRRQFMRNGLRMLNQLHHGL 259
           ML +  +  +++  ++R++  ++ +L     LP W    ++ R G  MLN+L   L
Sbjct: 1   MLGIRKNIRISVNFLQRRTITVKQKLGKNRPLPGWDPNSEYFRPGPTMLNRLQEHL 56


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 34  MWWLLAREVLRLRGVLSRDQRW 99
           +WW L+R+  R    LSR  +W
Sbjct: 68  IWWSLSRKATRFYRWLSRSLKW 89


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 157 ALPSHSLQGHDRRTSQRQHPNAGH 86
           A+ SHS + H +RT+Q+      H
Sbjct: 546 AISSHSSESHSKRTTQQPKSTPNH 569


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
 Frame = +2

Query: 74  VFLVVTSVGM--LSLTCSSI--VTLKRVRRK--SNKLRNRLSSLPKWKRRRQFMRNGLRM 235
           V+L+  + G   L LT +SI  V+L+  R +  +N L  R SSL   +      RNG ++
Sbjct: 16  VYLISVNCGARELWLTITSIHFVSLREQRYEFLANSLGERTSSLKSQEEMVSVSRNGKQL 75

Query: 236 LNQ 244
           L++
Sbjct: 76  LSE 78


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 104 LSLTCSSIVTLKRVRRKSNKLRNRLSSLPKWKRRRQFMRNGLRMLNQL 247
           L  + S+   +KRV  +   LR R    P+  +R  F  +G+R++ +L
Sbjct: 365 LEQSLSACAIMKRVYFRHFNLRERWLHAPEKIKRCSFPIHGVRLITKL 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,762
Number of Sequences: 5004
Number of extensions: 26048
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)