Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H22
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    52   3e-07
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    29   1.3  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 5/46 (10%)
 Frame = +1

Query: 10  KSSHSIGLMWWLLAREVLRLRGVLSRDQRW-----DVVVDLFFYRD 132
           K   SIGLMWW+LARE+L LRG +SR   +     +++ DL+FYRD
Sbjct: 166 KGERSIGLMWWMLAREILILRGKISRQTGFVLEGKEIMPDLYFYRD 211


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
           protein Y51H4A.12 protein.
          Length = 1677

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 301 YQM*QEQRVPVLHLQPMMQLVQHSQSIPHELAAALPLWERRQPVP 167
           YQM  +Q+    H  PM Q  +HS      L  A+PL ++  P P
Sbjct: 707 YQMHHQQQQQHHHQMPMDQRKRHSSGRYDALMGAMPLQQQPPPPP 751


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -3

Query: 277 VPVLHLQPMMQ---LVQHSQSIPHELAAALPLWERRQPVP*LVALPSHSLQ 134
           +P++ LQP  Q   L+    S+P     +LP   R  P P L ALP   LQ
Sbjct: 328 LPLILLQPSRQALPLILLQPSLPQNQLRSLPAHPRILPRPSLPALPLILLQ 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,125,839
Number of Sequences: 27780
Number of extensions: 155600
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)