Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H22
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   0.74 
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   2.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.1  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
 Frame = +2

Query: 89  TSVGMLSLTCSSIVTLKRVRRKSNKLRNRLSSLPKWKRRR-QFMRN--GLRMLNQLH--H 253
           T++G+L+     I +L+   RK    + +LS   ++ RRR + + N  GL  L+ LH  H
Sbjct: 85  TTLGLLTKAKRFIKSLEERERKHAVHKEQLSREQRFLRRRLEQLTNQTGLHGLHGLHGLH 144

Query: 254 GL 259
           GL
Sbjct: 145 GL 146


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 442 KRRYITFTRRSSLGQNLPMTE 380
           + RY+T  RR  L ++L +TE
Sbjct: 41  ENRYLTERRRQQLSRDLGLTE 61


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 167 RNRLSSLPKWKRRRQFMRNGLRM 235
           RNR SSLP +K +   + N L M
Sbjct: 312 RNRFSSLPYYKYKYLNVINALEM 334


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 167 RNRLSSLPKWKRRRQFMRNGLRM 235
           RNR SSLP +K +   + N L M
Sbjct: 312 RNRFSSLPYYKYKYLNVINALEM 334


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 70  RGVLSRDQRWDVVVD 114
           RG++   +RW  V+D
Sbjct: 320 RGIMMLPERWQKVID 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,175
Number of Sequences: 438
Number of extensions: 1801
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)