Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H21
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        36   0.005
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    32   0.043
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    27   2.2  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   3.8  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +3

Query: 204  QKRVRQTDDE-VTFL-IPSKVAGSIIGKGGTNISKLRSQYKASITVPDCPGPERVL 365
            +K ++Q  +  + +L IP+ +   IIG GG+ I+K+R   +  I VP  PG E V+
Sbjct: 1198 EKSIKQVMENCIAYLGIPTNLHRRIIGSGGSIINKIRKIAQVKIDVPRTPGDEIVV 1253



 Score = 31.9 bits (69), Expect = 0.057
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +3

Query: 240 FLIPSKVAGSIIGKGGTNISKLRSQYKASITVPDCPGPERVLSILTEDVDTLLEIVKEIL 419
           F  P++ + ++IGK G+N+S LR      I V +  G  R+  I     +T   I  +I 
Sbjct: 734 FDFPAQYSKNVIGKNGSNVSSLREDLGVQINVEE--GHIRIQGIKKNVEETAARIKSQIE 791

Query: 420 PCLSD 434
             + D
Sbjct: 792 ALIDD 796



 Score = 31.9 bits (69), Expect = 0.057
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 237 TFLIPSKVAGSIIGKGGTNISKLRSQYKASITVPD 341
           T  IPSK    ++G+ G+ +  +R+Q+   I + D
Sbjct: 886 TIDIPSKAVSRVVGRNGSTVENIRTQFDVKIDIGD 920



 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = +3

Query: 246  IPSKVAGSIIGKGGTNISKLRSQYKASITVPDCPGPERVLSILTEDVDTLLEIVKEIL 419
            +P +   SIIG+ G+    +  +    + +P+   PE  ++I         E  KE++
Sbjct: 1045 VPQRCISSIIGRMGSTRRDIERKTSTMLNIPNVLDPEETVTITIVGSPENCEKAKEMI 1102


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 32.3 bits (70), Expect = 0.043
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
 Frame = +3

Query: 243 LIPSKVAGSIIGKGGTNISKLRS--QYKASITVPDCPGPERVLSIL--TEDVDTLLEIVK 410
           L+ ++ AG IIGK G N+++LRS    KA +T       +RVL+I    E+V      + 
Sbjct: 99  LLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKAVPNVHDRVLTISGPLENVVRAYRFII 158

Query: 411 EILPCLSDRGPKGDINDQDL--DVRVLIHQSRAG 506
           +I    +   P G  +D +    +R+LI  S  G
Sbjct: 159 DIF-AKNSTNPDGTPSDANTPRKLRLLIAHSLMG 191



 Score = 31.5 bits (68), Expect = 0.076
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 246 IPSKVAGSIIGKGGTNISKLRSQYKASITVPDCPGPE 356
           IP+ + G IIG+GG+ IS++R    + I++   P  E
Sbjct: 327 IPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHDE 363



 Score = 29.1 bits (62), Expect = 0.40
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
 Frame = +3

Query: 165 IMKRDAYNDDG-PSQKRVRQTDDEVTFLIPSKVAGSIIGKGGTNISKLRSQYKASITVPD 341
           I  +++ N DG PS      T  ++  LI   + GSIIG+ G  I  ++ +    +    
Sbjct: 160 IFAKNSTNPDGTPSDAN---TPRKLRLLIAHSLMGSIIGRNGLRIKLIQDKCSCRMIASK 216

Query: 342 CPGP---ERVLSILTEDVDTLLEIVKEILPCLSDRGPKG 449
              P   ER + I    VD L   + EI  CL D   +G
Sbjct: 217 DMLPQSTERTVEI-HGTVDNLHAAIWEIGKCLIDDWERG 254


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 207 KRVRQTDDEVTFLIPSKVAGSIIGKGGTN 293
           KRVR  DD +TF   S V+ S +  G +N
Sbjct: 144 KRVRNEDDSLTFSKTSPVSPSSLKDGASN 172


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 207 KRVR-QTDDEVTFLIPSKVAGSIIGKGGTNISKLRSQYKASITVPD 341
           +R+R + D  V  +I   V+  +     T++  L S+   SIT PD
Sbjct: 389 ERIRLEIDHHVQEIIDDVVSNLVTNHSSTSLGHLESKLAPSITFPD 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,484
Number of Sequences: 5004
Number of extensions: 41662
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)