Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H20
         (206 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   1.4  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    24   3.2  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    23   7.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    23   7.3  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    22   9.6  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    22   9.6  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    22   9.6  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    22   9.6  
SPAC3F10.15c |spo12||Spo12 family protein|Schizosaccharomyces po...    22   9.6  

>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -1

Query: 110 FYQKKTLSPAPTCRNHKGMKAS----PQQKHSRVYKS 12
           ++ KKT+SP P  +      A     P+++H+  Y+S
Sbjct: 469 YFPKKTVSPKPEAKKEASKVAESTKIPKKQHTSAYES 505


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 28  LCFCCGLAFIPLWFR 72
           +CF CG+   PLW R
Sbjct: 364 VCFNCGVTETPLWRR 378


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 22  TRLCFCCGLAFIPLWFRQVGAGLRVFFW*NLKNKGLTFK 138
           T  C   G   +PLW        RVF   N+K + + FK
Sbjct: 214 TVCCNASGTERLPLWVIGYSQSPRVFRAANVKPEVMNFK 252


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 103 W*NLKNKGLTFKTGYIYI 156
           W NL+NK LT     IY+
Sbjct: 70  WSNLRNKSLTINIEDIYL 87


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -1

Query: 158 YMYI*PVLKVNPLFFKFYQKKTLSPAPTCRNHKGMKASPQQKHSRV 21
           Y+ +   L VN     FY      P P  ++  G K SP+  +S +
Sbjct: 464 YLDVADFLGVNRYKGLFYFSSAFRPCPIEQHFIGAKGSPKIVNSNI 509


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 65  GFDRWGRGLGFFFGKT 112
           GF R GRG G FF ++
Sbjct: 369 GFYRGGRGRGGFFNRS 384


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 119 FFKFYQKKTLSPAPTCRN 66
           F KFY   T    P CR+
Sbjct: 368 FAKFYSTNTCHTCPVCRD 385


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = -3

Query: 111 VLPK--KNPKPRPHLSKPQGDE 52
           VLP    N KP+PHLS     +
Sbjct: 245 VLPSFSSNAKPKPHLSSKSSSQ 266


>SPAC3F10.15c |spo12||Spo12 family protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 90

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 17 YTLDYASVADSLSSPC 64
          + L+ AS  DSL SPC
Sbjct: 41 HALNVASPTDSLMSPC 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 782,724
Number of Sequences: 5004
Number of extensions: 12872
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)