Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H20
         (206 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ454817-1|ABE66901.1|   94|Homo sapiens immunoglobulin heavy ch...    28   4.8  
AJ006205-1|CAB43492.1|  100|Homo sapiens MUC-B1 protein.               28   6.3  

>DQ454817-1|ABE66901.1|   94|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 94

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 47  SLSSPCGFDRWGRG 88
           SL SP GFD WG+G
Sbjct: 74  SLGSPVGFDHWGQG 87


>AJ006205-1|CAB43492.1|  100|Homo sapiens MUC-B1 protein.
          Length = 100

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 104 QKKTLSPAPTCRNHKGMKASPQQKHSR 24
           ++   +PAPT R H+  K  PQQ   R
Sbjct: 62  EEAAAAPAPTSRGHRTEKRKPQQPQRR 88


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,895,050
Number of Sequences: 237096
Number of extensions: 505612
Number of successful extensions: 1412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 76,859,062
effective HSP length: 47
effective length of database: 65,715,550
effective search space used: 1380026550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)