Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H20
(206 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p... 27 2.4
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p... 27 2.4
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr... 26 4.2
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (... 26 4.2
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (... 26 4.2
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein. 26 4.2
U58757-14|AAZ82850.1| 233|Caenorhabditis elegans Hypothetical p... 25 7.4
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ... 25 7.4
AC024859-1|ABA00161.2| 443|Caenorhabditis elegans Hypothetical ... 25 7.4
AC006677-3|AAF39952.2| 298|Caenorhabditis elegans Serpentine re... 25 7.4
Z81035-10|CAB02733.2| 405|Caenorhabditis elegans Hypothetical p... 25 9.7
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 25 9.7
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 25 9.7
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 25 9.7
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z70753-12|CAA94761.2| 585|Caenorhabditis elegans Hypothetical p... 25 9.7
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 25 9.7
>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -1
Query: 155 MYI*PVLKVNPLFFKFYQKKTLSPAPTCRNHKGMKASPQQK 33
MYI L N FF Y +P +C N M A+ K
Sbjct: 258 MYILSTLSPNDYFFGVYFNNHFNPIISCANRTFMPATTSNK 298
>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -1
Query: 155 MYI*PVLKVNPLFFKFYQKKTLSPAPTCRNHKGMKASPQQK 33
MYI L N FF Y +P +C N M A+ K
Sbjct: 258 MYILSTLSPNDYFFGVYFNNHFNPIISCANRTFMPATTSNK 298
>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -1
Query: 155 MYI*PVLKVNPLFFKFYQKKTLSPAPTCRNHKGMKASPQQK 33
MYI L N FF Y +P +C N M A+ K
Sbjct: 258 MYILSTLSPNDYFFGVYFNNHFNPIISCANRTFMPATTSNK 298
>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -1
Query: 155 MYI*PVLKVNPLFFKFYQKKTLSPAPTCRNHKGMKASPQQK 33
MYI L N FF Y +P +C N M A+ K
Sbjct: 258 MYILSTLSPNDYFFGVYFNNHFNPIISCANRTFMPATTSNK 298
>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -1
Query: 140 VLKVNPLFFKFYQKKTLSPAPTCRNHKGMKASPQQKHSRVYKSAS 6
+ +N F KF+ L APTCR + + ++P+ ++ + + S
Sbjct: 8 IAAINNNFRKFFILFLLLLAPTCRGQQKVPSAPRNFNAELTSATS 52
>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -1
Query: 140 VLKVNPLFFKFYQKKTLSPAPTCRNHKGMKASPQQKHSRVYKSAS 6
+ +N F KF+ L APTCR + + ++P+ ++ + + S
Sbjct: 8 IAAINNNFRKFFILFLLLLAPTCRGQQKVPSAPRNFNAELTSATS 52
>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform b protein.
Length = 1069
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 116 FKFYQKKTLSPAPTCRNHKGMKASPQ 39
F +++KK + TCRN K PQ
Sbjct: 293 FTYFEKKCFASPNTCRNVPSFKRVPQ 318
>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform a protein.
Length = 1065
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 116 FKFYQKKTLSPAPTCRNHKGMKASPQ 39
F +++KK + TCRN K PQ
Sbjct: 293 FTYFEKKCFASPNTCRNVPSFKRVPQ 318
>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
Length = 1487
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -1
Query: 140 VLKVNPLFFKFYQKKTLSPAPTCRNHKGMKASPQQKHSRVYKSAS 6
+ +N F KF+ L APTCR + + ++P+ ++ + + S
Sbjct: 8 IAAINNNFRKFFILFLLLLAPTCRGQQKVPSAPRNFNAELTSATS 52
>U58757-14|AAZ82850.1| 233|Caenorhabditis elegans Hypothetical
protein C01B10.11 protein.
Length = 233
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 8 MLIYT-LDYASVADSLSSPCGFDR 76
M+ YT D+ SVAD S+ CGF R
Sbjct: 173 MISYTKTDFDSVADFDSTVCGFPR 196
>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
protein Y46G5A.6 protein.
Length = 1002
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 206 FFLFFFIKENIYSF*IYMYI*PVLKVNPLFFKFYQK 99
F FFF EN++ F + I P+FF+F+ +
Sbjct: 935 FLNFFFHFENMHFFKFSLQIWRHFYFQPIFFQFFSE 970
>AC024859-1|ABA00161.2| 443|Caenorhabditis elegans Hypothetical
protein Y71H2AM.9 protein.
Length = 443
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 11 LIYTLDYASV--ADSLSSPCGFDRWGRGLGFFFGKT*KIRG*PLRLVIYTY 157
L++ Y ++ SL S CG +G GL + G + + PL + Y Y
Sbjct: 222 LLFPYGYGNMRYVTSLISGCGIMAFGCGLSMYHGISGLLHPEPLEPLTYAY 272
>AC006677-3|AAF39952.2| 298|Caenorhabditis elegans Serpentine
receptor, class x protein28 protein.
Length = 298
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 37 CCGLAFIPLWFRQVGAGLRVFFW*N 111
CC L F+PLW+ + + + F+ N
Sbjct: 102 CCAL-FMPLWYTHIFSNSKTVFYRN 125
>Z81035-10|CAB02733.2| 405|Caenorhabditis elegans Hypothetical
protein C15H11.6 protein.
Length = 405
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 80 PTCRNHKGMKASPQQKHSRV 21
P C N GM+ P+ H+R+
Sbjct: 177 PKCSNLDGMEVEPKPDHNRI 196
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 147 YIHIDLKGINIFFYKKKQKK 206
Y+H+DLK NI F K+ +
Sbjct: 5849 YVHLDLKPENIMFTTKRSNE 5868
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 147 YIHIDLKGINIFFYKKKQKK 206
Y+H+DLK NI F K+ +
Sbjct: 6378 YVHLDLKPENIMFTTKRSNE 6397
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 147 YIHIDLKGINIFFYKKKQKK 206
Y+H+DLK NI F K+ +
Sbjct: 6059 YVHLDLKPENIMFTTKRSNE 6078
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 147 YIHIDLKGINIFFYKKKQKK 206
Y+H+DLK NI F K+ +
Sbjct: 5849 YVHLDLKPENIMFTTKRSNE 5868
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 147 YIHIDLKGINIFFYKKKQKK 206
Y+H+DLK NI F K+ +
Sbjct: 6378 YVHLDLKPENIMFTTKRSNE 6397
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 147 YIHIDLKGINIFFYKKKQKK 206
Y+H+DLK NI F K+ +
Sbjct: 6059 YVHLDLKPENIMFTTKRSNE 6078
>Z70753-12|CAA94761.2| 585|Caenorhabditis elegans Hypothetical
protein F40F9.5 protein.
Length = 585
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 19 YTRLCFCCGLAFIPLWF 69
+TRLC C LAF+ + F
Sbjct: 346 WTRLCLCVSLAFVFIEF 362
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 147 YIHIDLKGINIFFYKKKQKK 206
Y+H+DLK NI F K+ +
Sbjct: 5268 YVHLDLKPENIMFTTKRSNE 5287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,251,707
Number of Sequences: 27780
Number of extensions: 70634
Number of successful extensions: 200
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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