Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H20
         (206 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   0.50 
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   0.50 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   2.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   2.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   4.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   4.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    19   8.2  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    19   8.2  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    19   8.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   8.2  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 0.50
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 143 PVLKVNPLFFKFYQKKTLS-PAPTCRNHKGM 54
           PV+ + P   KF++  TL+ P P   N KGM
Sbjct: 37  PVITIEPRRRKFHKPITLTIPVPQAAN-KGM 66


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.6 bits (46), Expect = 0.50
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 71 RNHKGMKASPQQKHSRVYKSA 9
          R+H G   SP++K  R   SA
Sbjct: 9  RSHNGKNGSPEEKRPRTAFSA 29


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 37  CCGLAFIPLWFRQVGAGLRVF 99
           C G +   +W R+  A L VF
Sbjct: 581 CLGSSIKAMWLRRALASLMVF 601


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 104 QKKTLSPAPTCRNHKGMKASPQQKH 30
           Q   L+P+P   +  G + +P+Q H
Sbjct: 137 QNLYLTPSPQMYSSGGEEITPRQSH 161


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 177 YLFLLNLYVYITSL 136
           +LFL NLY+ +  L
Sbjct: 918 HLFLTNLYIQMREL 931


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 177 YLFLLNLYVYITSL 136
           +LFL NLY+ +  L
Sbjct: 956 HLFLTNLYIQMREL 969


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 162 NLYVYITSLKG*PLI 118
           N Y YI+ L G  L+
Sbjct: 186 NTYAYISDLSGYALV 200


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +1

Query: 28  LCFCCGLAFIPLWFRQVG 81
           +C C   +F  LW ++ G
Sbjct: 78  VCICRKTSFKDLWDKRFG 95


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
          receptor 2 protein.
          Length = 210

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 99 KNPKPRPHLSKPQGD 55
          K  +P P ++ PQG+
Sbjct: 39 KEQEPLPPVTPPQGE 53


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 46  LAFIPLWF 69
           LAF+PL+F
Sbjct: 862 LAFVPLYF 869


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,995
Number of Sequences: 438
Number of extensions: 917
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2912559
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)