Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H17
(381 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 144 5e-36
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 142 2e-35
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 29 0.19
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.43
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.3
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 1.7
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 25 3.0
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 4.0
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 25 4.0
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom... 25 5.3
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 25 5.3
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce... 25 5.3
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 24 7.0
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 24 7.0
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 24 7.0
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 24 7.0
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 24 7.0
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 24 7.0
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 24 9.3
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 144 bits (348), Expect = 5e-36
Identities = 71/109 (65%), Positives = 79/109 (72%)
Frame = +2
Query: 50 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 229
MGRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R
Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60
Query: 230 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTNDMLKML 376
+ VRGIS KLQEEERER+D YVPEVS LE+D I VD DT DMLK L
Sbjct: 61 IQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKAL 109
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 142 bits (344), Expect = 2e-35
Identities = 70/109 (64%), Positives = 78/109 (71%)
Frame = +2
Query: 50 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 229
MGRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R
Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60
Query: 230 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTNDMLKML 376
+ VRGIS KLQEEERER+D YVPEVS LE D + VD DT DMLK L
Sbjct: 61 IQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSL 109
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 29.5 bits (63), Expect = 0.19
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 265 LNRDSSHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE 131
+NR +L + + ++ G FV + LS+ND NF+ P +G E
Sbjct: 228 MNRPQRYLTI--SKQRLAGSDPYFV-RSLSKNDKNFIMIPTVGYE 269
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.43
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -3
Query: 250 SHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE----VKSKPSVVFF 101
SH+ + +T+ + G P V KR+ D N L + IE +KS P VV +
Sbjct: 37 SHVYLVQTNSKTDGSPITAVLKRMYSPDENALRFVKTEIETMELLKSNPHVVSY 90
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 1.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 239 SQVRGISIKLQEEERERRDNYVPEV 313
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 1.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 224 RRLIHSQVRGISIKLQEEERERRDNYVPEVS 316
R+ S+ R S KL EEER+RR +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 3.0
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 229 TSHQMGGEPSNFVAKRLSRNDSN 161
TS MGG PS F LSRN N
Sbjct: 455 TSSIMGGNPSLFNGSVLSRNSVN 477
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 4.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 329 PVLEQILLGHNCHAF 285
P+LEQ+L G+NC F
Sbjct: 142 PMLEQVLNGYNCTIF 156
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 4.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 209 TTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTND 361
+ HLM ++ + + QEE R+RR ++ E E++ +D D ++
Sbjct: 99 SAHLMTKIFSLSGKLNMVLSQEEMRQRRLDFSSEDGEEEEENDYIDEDVDE 149
>SPBC577.03c |||GCN5-related N-acetyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 5.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 70 LSPNTTHDCGDVSLVP 23
++ NTT DCG++ LVP
Sbjct: 3 INQNTTVDCGNLILVP 18
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 24.6 bits (51), Expect = 5.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 295 VTPFTLLFLKLNRDSSHLGVYETSHQMGGEP 203
VTP TL FLK N + S L + + + EP
Sbjct: 35 VTPKTLEFLKQNINPSMLACVDEATMIDAEP 65
>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 5.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 114 LGLLLTSIPIKGYVRKLLSFLLSLFATKLL 203
+GLL TS I R L ++LFAT LL
Sbjct: 94 VGLLYTSASIYQMTRGSLIIFVALFATTLL 123
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.2 bits (50), Expect = 7.0
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 194 KIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYV 304
KIA FT ++ I G+S+KLQE+E +R + V
Sbjct: 352 KIASFTDIMVCLCIG----GLSLKLQEQELRKRPDIV 384
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 24.2 bits (50), Expect = 7.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 316 RYFWDIIVTPFTLLFLKLNRDSSHLGVYETSHQ 218
+YF I TP +L + +DS+ L YE+S Q
Sbjct: 489 KYFEINIETPVRILSCRCVKDSTLLPPYESSSQ 521
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 24.2 bits (50), Expect = 7.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 153 VRKLLSFLLSLFATKLLGSPPI**DVSYTPRCEESLLSFKK 275
VR LL FL+ + ++G+P VSY P + + F+K
Sbjct: 161 VRPLLRFLIEFWLNGVVGTPED--FVSYLPSTDSNDKKFRK 199
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 7.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 158 EIAIIPTKPLRNKIAGFTTHLMRRLIHSQVR 250
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.2 bits (50), Expect = 7.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 272 EEERERRDNYVPEVSALEQDIIEVDSDTNDM 364
E+ +N E++ L + I+E++S ND+
Sbjct: 452 EKRANESNNLQREIADLSEQIVELESKRNDL 482
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 24.2 bits (50), Expect = 7.0
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -3
Query: 145 FIGIEVKSKPSVVFFDYNLRRFFYGLSPNTTHDCGDVSLVP 23
F+ E S+ + +DY ++R YG+ + ++ D ++P
Sbjct: 551 FVPTEQNSQGFDILYDYFVKRNRYGVLHSKSNSVKDAYIIP 591
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +2
Query: 221 MRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEV 343
+ +L+H Q+ ++ + + E R+++ EV L I+E+
Sbjct: 169 LEQLVHEQLNKLNTESKMEFENRKNDTKNEVQQLSARIVEL 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,559,251
Number of Sequences: 5004
Number of extensions: 29286
Number of successful extensions: 116
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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