Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H17
(381 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal pr... 136 7e-33
AF026202-2|AAB71242.2| 501|Caenorhabditis elegans Hypothetical ... 30 0.64
Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical pr... 29 0.85
U39654-3|AAA80406.1| 490|Caenorhabditis elegans Hypothetical pr... 29 1.5
U39654-2|AAM51505.1| 510|Caenorhabditis elegans Hypothetical pr... 29 1.5
AF016684-7|AAB66206.1| 319|Caenorhabditis elegans Hypothetical ... 28 2.6
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 27 4.5
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 27 4.5
Z93391-2|CAB07681.1| 490|Caenorhabditis elegans Hypothetical pr... 26 7.9
AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math ... 26 7.9
>AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 17 protein.
Length = 130
Score = 136 bits (328), Expect = 7e-33
Identities = 66/110 (60%), Positives = 80/110 (72%), Gaps = 3/110 (2%)
Frame = +2
Query: 50 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 229
M RVRT YYTR+T DF NKR+C+E+AII +KPLRNKIAG+ THLMRR
Sbjct: 1 MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRR 60
Query: 230 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQD---IIEVDSDTNDMLK 370
+ VRGISIKLQEEERERRDNY+PE+S ++ I+VD+DT+DMLK
Sbjct: 61 IERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLK 110
>AF026202-2|AAB71242.2| 501|Caenorhabditis elegans Hypothetical
protein C10E2.2 protein.
Length = 501
Score = 29.9 bits (64), Expect = 0.64
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 203 GFTTHLMRRLIHSQVRGISIKLQEEERE 286
GFT L RLI +++R + ++EEE E
Sbjct: 471 GFTNELSERLIRAEIRAVEDNVEEEEFE 498
>Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical
protein C03C10.4 protein.
Length = 244
Score = 29.5 bits (63), Expect = 0.85
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +2
Query: 218 LMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQ 328
++ R ++SQ+ +SI L+ E +ER+D+Y + ALEQ
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALEQ 218
>U39654-3|AAA80406.1| 490|Caenorhabditis elegans Hypothetical
protein C56G3.1a protein.
Length = 490
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 199 NFVAKRLSRNDSNFLTYPFIGI 134
N+ + +S N SN+LTYPF G+
Sbjct: 8 NYCDRGISPNASNYLTYPFDGL 29
>U39654-2|AAM51505.1| 510|Caenorhabditis elegans Hypothetical
protein C56G3.1b protein.
Length = 510
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 199 NFVAKRLSRNDSNFLTYPFIGI 134
N+ + +S N SN+LTYPF G+
Sbjct: 28 NYCDRGISPNASNYLTYPFDGL 49
>AF016684-7|AAB66206.1| 319|Caenorhabditis elegans Hypothetical
protein F45C12.7 protein.
Length = 319
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -3
Query: 103 FDYNLRRFFYGLSPNTTHD-CGD--VSLVPNSARG 8
FDYN R Y L+PN + C D V+L P + G
Sbjct: 100 FDYNYLRCKYSLTPNCCQEKCSDNKVALTPKKSPG 134
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 176 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 292
T L NK AG L R+ + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 176 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 292
T L NK AG L R+ + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>Z93391-2|CAB07681.1| 490|Caenorhabditis elegans Hypothetical
protein W04G5.4 protein.
Length = 490
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 301 IIVTPFTLLFLKLNRDSSHLGVYET 227
II TP T ++ RDS+ G Y T
Sbjct: 282 IIFTPLTNAIFRIRRDSNEAGPYST 306
>AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math
domain containingprotein 3 protein.
Length = 306
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 237 TPRCEESLLSFKKRSVKGVTIMSQKYLL*N 326
T +CEE L+ F ++ +K +++KY L N
Sbjct: 235 TRKCEEFLIDFSEKPIKEKLKVAKKYQLEN 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,537,593
Number of Sequences: 27780
Number of extensions: 157534
Number of successful extensions: 462
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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