Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H14
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 237 6e-64
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 237 6e-64
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 237 6e-64
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 101 4e-23
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 91 6e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 54 1e-08
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 1.9
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 2.5
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 3.3
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 3.3
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 4.3
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 4.3
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 5.7
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 7.5
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom... 25 7.5
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 24 9.9
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 24 9.9
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 9.9
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 24 9.9
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 24 9.9
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 237 bits (580), Expect = 6e-64
Identities = 109/152 (71%), Positives = 130/152 (85%)
Frame = +1
Query: 10 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKE 189
LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++RFEEI KE
Sbjct: 114 LIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKE 171
Query: 190 VSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALD 369
S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW E K G +GK L+EA+D
Sbjct: 172 TSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAID 231
Query: 370 AILPPARPTDKALRLPLQDVYKIGGIGTVPVG 465
+I PPARPTDK LRLPLQDVYKIGGIGTVPVG
Sbjct: 232 SIEPPARPTDKPLRLPLQDVYKIGGIGTVPVG 263
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 237 bits (580), Expect = 6e-64
Identities = 109/152 (71%), Positives = 130/152 (85%)
Frame = +1
Query: 10 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKE 189
LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++RFEEI KE
Sbjct: 114 LIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKE 171
Query: 190 VSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALD 369
S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW E K G +GK L+EA+D
Sbjct: 172 TSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAID 231
Query: 370 AILPPARPTDKALRLPLQDVYKIGGIGTVPVG 465
+I PPARPTDK LRLPLQDVYKIGGIGTVPVG
Sbjct: 232 SIEPPARPTDKPLRLPLQDVYKIGGIGTVPVG 263
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 237 bits (580), Expect = 6e-64
Identities = 109/152 (71%), Positives = 130/152 (85%)
Frame = +1
Query: 10 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKE 189
LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++RFEEI KE
Sbjct: 114 LIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKE 171
Query: 190 VSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALD 369
S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW E K G +GK L+EA+D
Sbjct: 172 TSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAID 231
Query: 370 AILPPARPTDKALRLPLQDVYKIGGIGTVPVG 465
+I PPARPTDK LRLPLQDVYKIGGIGTVPVG
Sbjct: 232 SIEPPARPTDKPLRLPLQDVYKIGGIGTVPVG 263
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 101 bits (243), Expect = 4e-23
Identities = 59/145 (40%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Frame = +1
Query: 10 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKE 189
L+V + FE G +NGQTREHA L LG+ +++V VNK+D +SE RF+EIK
Sbjct: 284 LVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNI 341
Query: 190 VSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKGWLVERKEGKAEGKCLIE 360
VS + IK +G+ + V FVPIS G N++ + S W+K G L+
Sbjct: 342 VSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK------------GPTLLS 389
Query: 361 ALDAILPPARPTDKALRLPLQDVYK 435
ALD ++PP +P K LRL + DVY+
Sbjct: 390 ALDQLVPPEKPYRKPLRLSIDDVYR 414
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 91.5 bits (217), Expect = 6e-20
Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Frame = +1
Query: 10 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKE 189
L+++A GEFEAG + GQTREHA+LA T G+ L+V +NKMD +SE R++E +
Sbjct: 345 LVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDK 404
Query: 190 VSSYIKKI-GYNPAA-VAFVPISGWHGDNMLE--PSTKMPWFKGWLVERKEGKAEGKCLI 357
+S +++++ GYN V ++P+S + G N+ + S+ PW+ +G L+
Sbjct: 405 LSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWY------------QGPSLL 452
Query: 358 EALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVG 465
E LD++ R + +P+ YK +GT+ G
Sbjct: 453 EYLDSMTHLERKVNAPFIMPIASKYK--DLGTILEG 486
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 54.0 bits (124), Expect = 1e-08
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Frame = +1
Query: 64 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFV 243
QTREH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 156 QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY-------------- 201
Query: 244 PISGWHGDNM-LEPSTKMPWFKGWLVERKEGKAEGKCLIEALDA-ILPPARPTDKALRLP 417
G+ GDN + + + +G E + G L+EA+D+ I P R TD +
Sbjct: 202 ---GFDGDNTPIVSGSALCALEG--REPEIGLNSITKLMEAVDSYITLPERKTDVPFLMA 256
Query: 418 LQDVYKIGGIGTVPVG 465
++DV+ I G GTV G
Sbjct: 257 IEDVFSISGRGTVVTG 272
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 140 PLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLS 241
P S +++ +K +LPTS K++T PS+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVS 435
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 2.5
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -1
Query: 432 VYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFGGRLQHVI 265
V++ Q + S++ G + + V LNKAF+ S + F + S P HF ++ +V+
Sbjct: 1522 VWLSQAYSPSVLQGTT---ENVAFLNKAFSASANLFDVLPVSNTPSHF-SKMDYVL 1573
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 185 RKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKE 334
R+S S + + LPS PF++ + + ++P G + KKE
Sbjct: 639 RRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEGQKKAEARKKKE 688
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 3.3
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 133 MDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 303
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 4.3
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 64 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 204
QT EH + +K +I+ NK+D +E ++ I K + +
Sbjct: 149 QTSEHLAAIEIMQLKHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 4.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 142 TEPPYSESRFEEIKKEVSSYIKK 210
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 5.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 184 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 309
KEVS SYI +P +G+ +N+++P + P FKG
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 310 WLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 417
+L+ + K G E++DA+LP + +L +P
Sbjct: 628 YLLSSENAKDTGDIKSESIDAVLPTLETSSPSLSIP 663
>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 24.6 bits (51), Expect = 7.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 413 FPCKTYTKSAVLEQYPW 463
FPCK S L QYP+
Sbjct: 173 FPCKASAHSVPLSQYPY 189
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 349 CLIEALDAILPPARPTDKALRLPLQD 426
CLIE +AILP +DK L + +
Sbjct: 1349 CLIEKSNAILPHGSTSDKLFLLEIPE 1374
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 262 GDNMLEPSTKMPWFKGWLVERKEGK 336
GD +L + PW+ L+ RKE K
Sbjct: 53 GDRILVKAPGYPWWPALLLRRKETK 77
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 367 DAILPPARPTDKALRLPLQDVYKIGGIGTVPV 462
+ I P A+P+D+ L + + +GT+PV
Sbjct: 505 ERIEPEAKPSDETLTVRSSRDLSVHNVGTLPV 536
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 9.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 143 LSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCWS 280
LS+ T L + KSL ++ +T R+ +L+ P++ +CW+
Sbjct: 414 LSNDTNKLAVYMGFYKSLQSAGAAITYRMDTLNIPYM-NYFASCWA 458
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 24.2 bits (50), Expect = 9.9
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -1
Query: 414 KTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFG 286
+T L S +S + VEGLN S N PS + HFG
Sbjct: 309 ETSELSSTSSEQTSDVEGLNAYNNLGASSDIENAPSSQ-LHFG 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.136 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,094
Number of Sequences: 5004
Number of extensions: 46517
Number of successful extensions: 142
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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