Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H14
(465 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 263 4e-71
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 263 4e-71
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 201 2e-52
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 105 2e-23
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 105 2e-23
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 92 2e-19
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 71 5e-13
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 38 0.005
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 38 0.005
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 38 0.005
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 37 0.008
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 37 0.008
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 32 0.18
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.41
Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical pr... 27 5.0
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 27 5.0
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 6.6
U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical pr... 27 6.6
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 27 6.6
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 6.6
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr... 27 8.8
U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical pr... 27 8.8
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 263 bits (645), Expect = 4e-71
Identities = 123/152 (80%), Positives = 134/152 (88%)
Frame = +1
Query: 10 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKE 189
L+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE+RF EI E
Sbjct: 114 LVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNE 173
Query: 190 VSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALD 369
VS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD
Sbjct: 174 VSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALD 233
Query: 370 AILPPARPTDKALRLPLQDVYKIGGIGTVPVG 465
+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVG
Sbjct: 234 SIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVG 265
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 263 bits (645), Expect = 4e-71
Identities = 123/152 (80%), Positives = 134/152 (88%)
Frame = +1
Query: 10 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKE 189
L+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE+RF EI E
Sbjct: 114 LVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNE 173
Query: 190 VSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALD 369
VS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD
Sbjct: 174 VSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALD 233
Query: 370 AILPPARPTDKALRLPLQDVYKIGGIGTVPVG 465
+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVG
Sbjct: 234 SIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVG 265
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 201 bits (491), Expect = 2e-52
Identities = 91/118 (77%), Positives = 102/118 (86%)
Frame = +1
Query: 112 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 291
L+V NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 292 MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVG 465
MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVG
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVG 231
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 105 bits (251), Expect = 2e-23
Identities = 57/144 (39%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Frame = +1
Query: 10 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKE 189
L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK
Sbjct: 277 LVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNN 334
Query: 190 VSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEAL 366
+S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ +G CL+E +
Sbjct: 335 LSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------DGPCLLELI 379
Query: 367 DAILPPARPTDKALRLPLQDVYKI 438
D+ + P P+D LR+ + DV K+
Sbjct: 380 DSFVAPQPPSDGPLRIGISDVLKV 403
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 105 bits (251), Expect = 2e-23
Identities = 57/144 (39%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Frame = +1
Query: 10 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKE 189
L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK
Sbjct: 295 LVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNN 352
Query: 190 VSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEAL 366
+S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ +G CL+E +
Sbjct: 353 LSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------DGPCLLELI 397
Query: 367 DAILPPARPTDKALRLPLQDVYKI 438
D+ + P P+D LR+ + DV K+
Sbjct: 398 DSFVAPQPPSDGPLRIGISDVLKV 421
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 91.9 bits (218), Expect = 2e-19
Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Frame = +1
Query: 10 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKE 189
L+++A GEFE G + GQTREH++L T GVK L++ VNKMD + E RF+EI+ +
Sbjct: 216 LVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGK 275
Query: 190 VSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEAL 366
++ +++K+G+NP + +VP SG G + + T W G C IE +
Sbjct: 276 LTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSE--GNWY--------SGPCFIEFI 325
Query: 367 DAILPP-ARPTDKALRLPLQDVYKIGGIGTVPVG 465
D +LP R + +R + + Y +GTV +G
Sbjct: 326 DVLLPSYKRDFNGPVRCTVAEKY--SEMGTVIIG 357
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 70.5 bits (165), Expect = 5e-13
Identities = 38/59 (64%), Positives = 43/59 (72%)
Frame = +1
Query: 10 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKK 186
L+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R + I++
Sbjct: 114 LVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTIQR 169
Score = 53.6 bits (123), Expect = 7e-08
Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 176 KSRRKSLPTSRKLVTI-RLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVNA 352
+S +S +SR+ TI RL LS TE TC P CHGSRDG L+ +KE L
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQS-PDSTETTCLRSPRTCHGSRDGLLNARKETLPERP 210
Query: 353 LLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLE 451
R TPS A LT SVF + T+S LE
Sbjct: 211 SSRLLTPSSHHNAQLTDHSVFHSRMCTRSEELE 243
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 37.5 bits (83), Expect = 0.005
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Frame = +1
Query: 64 QTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVA 237
QTREH LLA +GV ++V +NK+D E P +E+R E ++ ++ + + GY P
Sbjct: 152 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY-PGDTC 207
Query: 238 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALD-AILPPARPTDKALRL 414
P+ G + K P + G+ K L+E LD + P R ++
Sbjct: 208 --PVI--FGSALCALEGKQP---------EIGEEAVKQLLEVLDNKFVIPERKVNEEPMF 254
Query: 415 PLQDVYKIGGIGTVPVG 465
+ VY I G GTV G
Sbjct: 255 AAEHVYSIVGRGTVITG 271
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 37.5 bits (83), Expect = 0.005
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Frame = +1
Query: 64 QTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVA 237
QTREH LLA +GV ++V +NK+D E P +E+R E ++ ++ + + GY P
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY-PGDTC 208
Query: 238 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALD-AILPPARPTDKALRL 414
P+ G + K P + G+ K L+E LD + P R ++
Sbjct: 209 --PVI--FGSALCALEGKQP---------EIGEEAVKQLLEVLDNKFVIPERKVNEEPMF 255
Query: 415 PLQDVYKIGGIGTVPVG 465
+ VY I G GTV G
Sbjct: 256 AAEHVYSIVGRGTVITG 272
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 37.5 bits (83), Expect = 0.005
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Frame = +1
Query: 64 QTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVA 237
QTREH LLA +GV ++V +NK+D E P +E+R E ++ ++ + + GY P
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY-PGDTC 208
Query: 238 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALD-AILPPARPTDKALRL 414
P+ G + K P + G+ K L+E LD + P R ++
Sbjct: 209 --PVI--FGSALCALEGKQP---------EIGEEAVKQLLEVLDNKFVIPERKVNEEPMF 255
Query: 415 PLQDVYKIGGIGTVPVG 465
+ VY I G GTV G
Sbjct: 256 AAEHVYSIVGRGTVITG 272
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 36.7 bits (81), Expect = 0.008
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 3/155 (1%)
Frame = +1
Query: 10 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKE 189
L++AA G E QT+EH +LA +GVK + + +NK D E E + ++ E
Sbjct: 137 LVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEME 185
Query: 190 VSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKC---LIE 360
+ G+N GD P +G + EG+ + C LI+
Sbjct: 186 ARELLSLHGFN-------------GD-------ATPVIRGSALSALEGQ-DISCIERLID 224
Query: 361 ALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVG 465
ALD++ P R +P+ I G GTV VG
Sbjct: 225 ALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 36.7 bits (81), Expect = 0.008
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 3/155 (1%)
Frame = +1
Query: 10 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKE 189
L++AA G E QT+EH +LA +GVK + + +NK D E E + ++ E
Sbjct: 137 LVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEME 185
Query: 190 VSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKC---LIE 360
+ G+N GD P +G + EG+ + C LI+
Sbjct: 186 ARELLSLHGFN-------------GD-------ATPVIRGSALSALEGQ-DISCIERLID 224
Query: 361 ALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVG 465
ALD++ P R +P+ I G GTV VG
Sbjct: 225 ALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 32.3 bits (70), Expect = 0.18
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -2
Query: 131 LFTPTISCLTPSVKASRACSRVCPFFEIPASNSPVPAATIS 9
LF PT+SC+ AS S P PA N VP AT+S
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLS 52
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 31.1 bits (67), Expect = 0.41
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 64 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGY--NPAAVA 237
QT EH LLA ++I+ +NK D E +S+ E K+V +K +G N V
Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENSPIVE 167
Query: 238 FVPISGWHGDNMLE 279
G+ + ML+
Sbjct: 168 MSLADGYFKEEMLQ 181
>Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical
protein ZC455.1 protein.
Length = 681
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 275 WSRPP-KCHGSRDGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSV 412
WS P K GS+D W + R +N+ R S + R + +RLSV
Sbjct: 6 WSATPIKMVGSQDSWGTPPHYRSSLNSNYRDSPANSRNTSARSRLSV 52
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -1
Query: 453 CSNTADFVYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSL 304
CS T DF+ ++ ++ S + D V ++ ++ +++F+TL+ PSL
Sbjct: 80 CSTTNDFIINIEHSSDKKFSRLLQ--DLVSRDSRTYSKAINFYTLDDPSL 127
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 139 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 255
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical
protein F58F9.7 protein.
Length = 667
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 212 LVTIRLPSLSYPFLAGTEITCWSRPPKC-HGSRDGWLSVKKERLKVNALL 358
++ +R P ++ L G I P C G +GW+ K R ++ALL
Sbjct: 206 VIQVRCPR-TFQTLPGITIGDMGSKPGCWQGVENGWMEFKNHRAPLSALL 254
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 174 LKSRLTVWWLSGVHFVYSYN 115
+KS L ++WL V+F +SYN
Sbjct: 250 IKSLLHIFWLPHVYFPFSYN 269
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 139 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 255
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical
protein D2005.5 protein.
Length = 1119
Score = 26.6 bits (56), Expect = 8.8
Identities = 28/118 (23%), Positives = 46/118 (38%)
Frame = +1
Query: 1 ARGLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEI 180
ARG+I+ +S +T A F G QL + + TE P E + E
Sbjct: 194 ARGMIIMKHLKSNPRCVS---ETTILAFEVFNKGNHQLSTDLVEDLLTEGPAFELKIEN- 249
Query: 181 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCL 354
+E +KK + F+ I G+ ++ E + W+ G++ K A L
Sbjct: 250 GEEKKYAVKKWSLHKTLTMFLAIIGFKSNDKKEKNEHEEWYYGFIDAMKNDPANRAAL 307
>U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical
protein F53B3.6 protein.
Length = 321
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 252 RNGYESDGSRIVTNFLDVGRDFLLDFLKSRLT 157
RN Y +DG ++ D+GRD DF S T
Sbjct: 101 RNEYPNDGGVVIPIRRDIGRDPQYDFRSSPQT 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.136 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,953,296
Number of Sequences: 27780
Number of extensions: 260159
Number of successful extensions: 752
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -