Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H13
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    27   2.1  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   3.6  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   6.3  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   8.3  

>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
 Frame = +1

Query: 196 RYYVTSHMQHYKFTIAPQLQVAFDSQPYGTCQRIFS*VPSSK--IILA*IEARSSR--AR 363
           ++ + S  QHYK+ +  +L    DS     CQRI     SS+     +  E   S   ++
Sbjct: 159 QHSLESWRQHYKY-MKKRLPPVSDSDESNYCQRIIVKPYSSQKDYTQSTHEQTLSSPISK 217

Query: 364 TGDCSRMAAGSLVNTKRFPRSPFFE*RHRRTS 459
           +   S+    +LVN KR+  S F+  + RR S
Sbjct: 218 SASVSKSENKALVNNKRYSDSYFYFSKMRRIS 249


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 429 WASRKAFSVDQTPGSHSRTVASAGSRR 349
           + S + F V   PG HSR V +A   R
Sbjct: 575 FVSGQTFPVTDVPGPHSRKVTTASKNR 601


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 396 TPGSHSRTVASAGSRRPSLNSSENNFRR 313
           +P S  R VAS G  RP+ N   + F R
Sbjct: 525 SPNSSPRFVASDGPNRPASNGRSSLFSR 552


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 308 YLRRKLFSLELRLGRREPALATVLEWLPGVWSTLNAFLEAH 430
           Y   K F+  LRL   EP L  V  +   V+  L   LEA+
Sbjct: 289 YFFHKYFTFPLRLLIFEPILLVVSTYTAFVYGILYGLLEAY 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,684
Number of Sequences: 5004
Number of extensions: 37650
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)