Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H13
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0506 + 18390892-18391373,18392699-18392798,18393152-183934... 30 0.89
06_03_0342 + 19737951-19738772 29 2.7
05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213 29 2.7
04_04_1191 + 31599067-31600194 29 2.7
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 2.7
08_02_0482 - 17643603-17643955,17644024-17646604 28 4.7
02_01_0225 - 1469295-1469733,1472352-1472767,1473603-1473658,147... 28 4.7
08_02_1234 + 25437340-25437502,25437983-25438381,25441198-254416... 27 6.3
06_03_1291 + 29062073-29062477 27 6.3
06_01_0473 + 3359152-3359198,3359568-3359768,3360502-3360646,336... 27 6.3
01_06_0928 + 33085403-33089224 27 6.3
09_04_0722 + 19729331-19729582,19730535-19730644,19730810-197309... 27 8.3
08_02_0607 + 19285580-19286138,19286734-19287668 27 8.3
06_01_0288 - 2106113-2109055 27 8.3
02_02_0501 - 10999203-10999754,11000724-11001460,11001461-110018... 27 8.3
>10_08_0506 +
18390892-18391373,18392699-18392798,18393152-18393485,
18393756-18393868,18394437-18394565,18394746-18394839,
18394942-18395025,18395265-18395896,18396662-18396951,
18397098-18397242,18397876-18397973,18398075-18398156,
18398607-18398612,18398845-18398928
Length = 890
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -1
Query: 423 SRKAFSVDQTPGSHSRTVASAGSRRPSLNSSENNFRRRYLAKNPLTGSI-WLAVKSH 256
S+KAF+ + S+ + S G R + + + N ++ NP+ GS W+++++H
Sbjct: 497 SQKAFNCSPSISSNGASSGSLGERHSNGGALKLNIKKDRGNANPIRGSSGWISIRAH 553
>06_03_0342 + 19737951-19738772
Length = 273
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 8 RKSCNELRAYLGNIAEQCGAATAGEEAA--LPSVVVLDNLQHASALGDAFAGLLP 166
R ELR L ++A Q GAA + AA L L LQ AL + G++P
Sbjct: 208 RLLAGELRGPLADVARQLGAAVPADAAAAGLAGAGALMALQAFEALREQCRGVMP 262
>05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213
Length = 491
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -1
Query: 495 LASNSIEHPRNSRGPTVTSLEEWASRKAFSVDQTPGSHSRTVASAGSRRPS 343
+A + PR + PT +L+ W + AF V +H V + G PS
Sbjct: 242 MAWELMNEPRCASDPTGDTLQAWIAEMAFHVKSVDPAHLLGVGAEGFYGPS 292
>04_04_1191 + 31599067-31600194
Length = 375
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = -2
Query: 101 PRVAR-PL--LPPSRRRIALLYCLDTLVVRC 18
PR+AR P LPPS RR++L C D L ++C
Sbjct: 327 PRMARLPEMGLPPSLRRLSLCRCSDDLSMQC 357
>02_01_0084 -
573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -1
Query: 492 ASNSIEHPRNSRGPTVTSLEEWASRKAFSVDQTPGSHSRTVASAGSRRPSLNSSENNFRR 313
ASN+ + SR PT +S AS K + + + G S + S +R + S + F+R
Sbjct: 95 ASNNASNSSTSRAPTRSSSTTTASSKDVAEEHSSGVGSTSSLSKKRKRMTAKSYRSLFKR 154
>08_02_0482 - 17643603-17643955,17644024-17646604
Length = 977
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 47 IAEQCGAATAGEEAALPSVVVLDNLQHASALGDAFAGLLPPDNRNMP 187
+ E G A +G A P++ NL + FAG LPP+ ++P
Sbjct: 413 LLELAGNALSG--AVAPAIATARNLSQLLISDNRFAGALPPELGSLP 457
>02_01_0225 -
1469295-1469733,1472352-1472767,1473603-1473658,
1473827-1473995
Length = 359
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = -1
Query: 393 PGSHSRTVASAGSRRPS---LNSSE-NNFRRRYLAKN 295
PGS SRT A+AGS PS N S+ ++F ++A N
Sbjct: 100 PGSQSRTSAAAGSSGPSNFRYNPSDPDDFFAEFMASN 136
>08_02_1234 +
25437340-25437502,25437983-25438381,25441198-25441615,
25442353-25442542
Length = 389
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 495 LASNSIEHPRNSRGPTVTSLEEWASRKAFSVDQTP 391
L+ +I P SR PT TSL SR+ S D P
Sbjct: 11 LSHRAIPSPPPSRPPTTTSLPFLLSRRLLSDDAAP 45
>06_03_1291 + 29062073-29062477
Length = 134
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -1
Query: 222 LHVACDIVPMMTGMFLLSGGRRPAKASPSADACCKLSRTT 103
L + CD+ + L++ G AKA A A C S T
Sbjct: 90 LRIPCDVAAFEATLRLVAAGNGNAKAKDDAAAMCSCSSDT 129
>06_01_0473 +
3359152-3359198,3359568-3359768,3360502-3360646,
3361141-3361407,3361608-3362150
Length = 400
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 216 VACDIVPMMTGMFLLSGGRRPAKASPSADAC 124
+ CD+ + LS GRRP + S SA C
Sbjct: 262 IGCDVYSFGIILLELSSGRRPVERSGSAKMC 292
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = -2
Query: 188 QACSCCPAVGGXXXXXXXXXXAVSCQELQPRVARPLLPPSRRRIALLYCL 39
++C C ++GG SC L+ +P S RR+ + C+
Sbjct: 998 RSCWCIRSLGGLRAVSIKEMRLFSCPSLELACGAEFIPLSLRRLCIYRCV 1047
>09_04_0722 +
19729331-19729582,19730535-19730644,19730810-19730930,
19731080-19731175,19731429-19731838,19732251-19732309,
19733235-19733287,19733432-19733485
Length = 384
Score = 27.1 bits (57), Expect = 8.3
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +2
Query: 212 ATCNTTNLQLHHNFRWLLTANHMEPVKGFLARYLRRKLFSLELRLGRREPALATVLEWLP 391
A CN N Q+ H+ RWL A + P RK+ S++ + VL+ L
Sbjct: 111 AECNPKNYQIWHHKRWL--AEKLGPDIANKEHEFTRKILSMDAKNYHAWSHRQWVLQALG 168
Query: 392 GVWST 406
G W T
Sbjct: 169 G-WET 172
>08_02_0607 + 19285580-19286138,19286734-19287668
Length = 497
Score = 27.1 bits (57), Expect = 8.3
Identities = 21/85 (24%), Positives = 36/85 (42%)
Frame = +2
Query: 143 DAFAGLLPPDNRNMPVIIGTMSQATCNTTNLQLHHNFRWLLTANHMEPVKGFLARYLRRK 322
DA AG D R + ++ + A +L L TA+ + + ++L R
Sbjct: 122 DADAGAGAGDARRVTCVVADSTMAFAILAARELGLRCATLWTASACGFMGYYHYKHLDRG 181
Query: 323 LFSLELRLGRREPALATVLEWLPGV 397
LF L+ L T ++W+PG+
Sbjct: 182 LFPLKSEADLSNGHLDTKMDWIPGM 206
>06_01_0288 - 2106113-2109055
Length = 980
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 89 ALPSVV-VLDNLQHASALGDAFAGLLPPDNRNMPVIIGTMSQATCNTTNLQLHHNFRWL 262
A+P + L+H FAGL+PP N+ + +S N++ +++ NF W+
Sbjct: 122 AIPDFIGSFSKLRHLDLSHAGFAGLVPPQLGNLSM----LSHLALNSSTIRM-DNFHWV 175
>02_02_0501 -
10999203-10999754,11000724-11001460,11001461-11001836,
11001917-11001946,11002718-11002912,11003604-11004149
Length = 811
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 65 AATAGEEAALPSVVVLDNLQH-ASALGDAFAGLLPPDNRNM 184
AA AG AA PSV +LD +QH G A PD+R +
Sbjct: 57 AAGAGGCAAAPSVELLDIVQHPLPGYGAPVALSFSPDDRRV 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,818,939
Number of Sequences: 37544
Number of extensions: 283775
Number of successful extensions: 953
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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