Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H13
         (495 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.58 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   7.2  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   7.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 160 PTAGQQEHACHHRYYVTSHMQHYKFTIAPQLQVAFDS 270
           PT G   H  HH+   T  +QH  +   P L  ++ S
Sbjct: 345 PTMGPPHHHHHHQ---TQSLQHLHYRQPPTLSESYSS 378


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 216 VACDIVPMMTGMFLLSGGRRPAKASPSADACCKLSRTT 103
           VAC   P  T       GRR  + +P  ++  K+ R +
Sbjct: 390 VACSPPPRQTPPSRKESGRRRRRRTPRYNSVSKIDRAS 427


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 8   RKSCNELRAYLGNIAEQCG 64
           R SC  LRAY   I   CG
Sbjct: 64  RVSCPVLRAYTCPICGACG 82


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 207 HKPHATLQIYNCTTTS 254
           +KP   L+++N TTT+
Sbjct: 93  NKPFKRLELFNITTTT 108


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = +2

Query: 11  KSCNELRAYLGNIAEQCGAATAGEE 85
           K C +L +++GN+ ++      G++
Sbjct: 471 KRCKDLASFMGNLLQETRTPGFGKD 495


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/42 (23%), Positives = 17/42 (40%)
 Frame = +2

Query: 161 LPPDNRNMPVIIGTMSQATCNTTNLQLHHNFRWLLTANHMEP 286
           + P   +  + +G  +  TC+ T   L  +  WL     M P
Sbjct: 613 ISPFTADRDLHLGERTTLTCSVTRGDLPLSISWLKDGRAMGP 654


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,909
Number of Sequences: 438
Number of extensions: 2645
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)