Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H12
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...   112   1e-25
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...   111   3e-25

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score =  112 bits (269), Expect = 1e-25
 Identities = 51/95 (53%), Positives = 64/95 (67%)
 Frame = +3

Query: 12  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 191
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 192 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGI 296
            T++Y+ K RAGRGFTL E++A+G+   FA TIGI
Sbjct: 61  QTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGI 95



 Score = 33.1 bits (72), Expect = 0.10
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +1

Query: 361 NVQRLKEYRARLILFPERVQE 423
           NVQRLK Y+A+L++FP R ++
Sbjct: 112 NVQRLKTYKAKLVIFPRRARK 132


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score =  111 bits (266), Expect = 3e-25
 Identities = 50/95 (52%), Positives = 64/95 (67%)
 Frame = +3

Query: 12  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 191
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 192 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGI 296
            T++Y+ K RAGRGFTL E++A+G+   +A TIGI
Sbjct: 61  QTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGI 95



 Score = 33.1 bits (72), Expect = 0.10
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +1

Query: 361 NVQRLKEYRARLILFPERVQE 423
           NVQRLK Y+A+L++FP R ++
Sbjct: 112 NVQRLKTYKAKLVIFPRRARK 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,475,376
Number of Sequences: 37544
Number of extensions: 170770
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)