Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H12
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   106   6e-24
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    93   6e-20
Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    28   3.4  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  106 bits (255), Expect = 6e-24
 Identities = 47/93 (50%), Positives = 63/93 (67%)
 Frame = +3

Query: 18  KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 197
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR VVRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 198 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGI 296
            RY+TK R GRGF+L+E++A+G++ + ARTIGI
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAGISQAQARTIGI 96



 Score = 31.9 bits (69), Expect = 0.21
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 316 LETAXXNXSGXHYTINVQRLKEYRARLILFPER 414
           ++    N +      N  RLKEY+A+LILFP++
Sbjct: 98  VDVRRTNKTAEGLKANADRLKEYKAKLILFPKK 130


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 93.5 bits (222), Expect = 6e-20
 Identities = 41/84 (48%), Positives = 54/84 (64%)
 Frame = +3

Query: 18  KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 197
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR VVRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 198 VRYHTKVRAGRGFTLREIRASGLN 269
            RY+TK R GRGF+L+E++A+  N
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAEEN 87


>Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 119 LLSTMTTSWLIKPCLHKSLPILMEMAIWYH 30
           LL+ +  SW + P +H +LPIL    I  H
Sbjct: 56  LLAELLNSWFLIPVVHVNLPILRFTGILSH 85


>Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 119 LLSTMTTSWLIKPCLHKSLPILMEMAIWYH 30
           LL+ +  SW + P +H +LPIL    I  H
Sbjct: 56  LLAELLNSWFLIPVVHVNLPILRFTGILSH 85


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 182 CSLPYCALSYKSSCRQRIYPT 244
           CS P C  S +SSC+Q   PT
Sbjct: 204 CSTPICIQSCQSSCQQACQPT 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,022,913
Number of Sequences: 27780
Number of extensions: 150159
Number of successful extensions: 306
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)