Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H11
         (295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    24   4.0  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    24   4.0  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    23   7.1  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    23   9.3  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    23   9.3  

>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 113 FTMSVIAITD-VPVMWSIKSVMLNFAKIINGYFEVINFSNL 232
           F  + + I D +  +W      L + KI+NG  + + FS L
Sbjct: 404 FAFNDLVIFDKLQKLWKYDDTTLEYLKIVNGGIKFVAFSIL 444


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 155 WSIKSVMLNFAKIINGYFEVINFSNLKAKTK 247
           W IK +  +++  + G   VIN+S  K K K
Sbjct: 252 WDIKKIQKDYSLDVYGAIRVINYSR-KTKKK 281


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 165 LMDHMTGTSVIA-ITDMVKNFKGLSHLFPSL*PILML 58
           LMD +   S+++    +VKN  GL+ +  S  P+L+L
Sbjct: 809 LMDQLMSNSLVSGAATLVKNDDGLATVPTSYDPVLVL 845


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 234 KQKRRIVLYVWDHH 275
           K  R  +++ WDHH
Sbjct: 25  KHVRSCIIFTWDHH 38


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = +2

Query: 107 KFFTMSVIAITDVPVMWSIKSVMLNFAKIIN 199
           +FF+ S+   +D+P+   I+  M + +K+++
Sbjct: 210 EFFSKSMAVYSDLPIEGEIRQFMNSTSKVMS 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,049,645
Number of Sequences: 5004
Number of extensions: 16626
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)