Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H11
         (295 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0316 - 23045214-23045261,23045322-23045400,23045548-230457...    27   3.5  
01_06_0163 - 27124246-27124335,27124454-27124663,27124746-271248...    26   4.6  
03_02_0236 + 6666104-6666202,6666530-6666832,6667476-6667550,666...    25   8.0  

>03_05_0316 -
           23045214-23045261,23045322-23045400,23045548-23045707,
           23046937-23047006,23047439-23048017
          Length = 311

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -1

Query: 136 NRYNRHGKEF*RAVTFISKPLTNINAIPQTR*LINL 29
           N Y   G EF RAVT    PLTN+    QT+ L +L
Sbjct: 267 NNYRISGTEF-RAVTTYRLPLTNLWDTQQTKELPSL 301


>01_06_0163 -
           27124246-27124335,27124454-27124663,27124746-27124875,
           27124973-27125143,27125268-27125387,27125642-27125746,
           27125819-27126471
          Length = 492

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 156 HMTGTSVIAITDMVKNFKGLSHLFPS 79
           H +GT ++ + D  +  KG+SHL  S
Sbjct: 83  HDSGTPIMPVQDKYEQMKGVSHLAES 108


>03_02_0236 +
           6666104-6666202,6666530-6666832,6667476-6667550,
           6668329-6668367,6668905-6668923,6669796-6669852,
           6670432-6670559,6670644-6670712,6671116-6671201,
           6671285-6671394,6672060-6672110,6672602-6672660,
           6672953-6672997,6673132-6673206,6673314-6673430
          Length = 443

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 141 SVIAITDMVKNFKGLS 94
           SV+ ITDM++NF+G S
Sbjct: 39  SVLPITDMIENFQGPS 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,246,059
Number of Sequences: 37544
Number of extensions: 90205
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)