Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H11
         (295 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri...    29   0.76 
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ...    29   0.76 
Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    25   7.1  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        25   7.1  
AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical...    25   7.1  
U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    25   9.4  

>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
           protein 2 protein.
          Length = 1262

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 155 WSIKSVMLNFAKIINGYFEVINFSNLKAKTK 247
           W  KS+M  F  I N Y + I   +LKA T+
Sbjct: 892 WGSKSLMAAFMNICNAYSQCIGTQHLKAITR 922


>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
           protein.
          Length = 1262

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 155 WSIKSVMLNFAKIINGYFEVINFSNLKAKTK 247
           W  KS+M  F  I N Y + I   +LKA T+
Sbjct: 892 WGSKSLMAAFMNICNAYSQCIGTQHLKAITR 922


>Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical
           protein C30F2.3 protein.
          Length = 403

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 184 CEDYQRL-LRSNQLFKLESKNEGLYCTYGTITESYDGC 294
           C++Y ++ L S Q ++  S  +       ++TESY+GC
Sbjct: 355 CQEYVQIYLSSRQQYQGISTQQSCPSLIASLTESYNGC 392


>U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical
           protein F02C9.2 protein.
          Length = 806

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 128 IAITDVPVMWSIKSVMLNFAKIINGY 205
           +   D P+ WSI  V ++ AK + GY
Sbjct: 616 VTCEDSPIWWSIADVGMDAAKRVVGY 641


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 119 MSVIAITDVPVMWSIKSVMLNFAKIINGYFEVINFSNLKAK 241
           +S  A  DVPV+  +   ++  +   N  F +++FSN+ AK
Sbjct: 292 LSTFAEEDVPVLSPLNGNVIFSSGRYNVCFSLLSFSNIYAK 332


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 119 MSVIAITDVPVMWSIKSVMLNFAKIINGYFEVINFSNLKAK 241
           +S  A  DVPV+  +   ++  +   N  F +++FSN+ AK
Sbjct: 167 LSTFAEEDVPVLSPLNGNVIFSSGRYNVCFSLLSFSNIYAK 207


>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
           protein Y47D3A.29 protein.
          Length = 1428

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 200 GYFEVINFSNLKAKTKDC 253
           G+ E+ N+S+ KAKT +C
Sbjct: 478 GWIELYNYSDPKAKTSNC 495


>U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical
           protein R13A1.3 protein.
          Length = 430

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +2

Query: 77  RLGNKCDSPLKFFTMSVIAITDVPVMWSIKSVMLNFAKII---NGYFEVINFSNLKAKTK 247
           +L N    P K    SV  + D+   W +KSV+  + + +     Y +  +  N+K   K
Sbjct: 191 KLMNFLHPPFKMERESVEEVLDLASKWEMKSVLAKYEQFLIRTRSYGQEASIKNVKLADK 250


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 3   TRDAFLFGFRFINYLV 50
           T D+FL G+ F NYLV
Sbjct: 81  TADSFLIGWPFTNYLV 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,714,726
Number of Sequences: 27780
Number of extensions: 91014
Number of successful extensions: 228
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)