Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H11
         (295 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.26 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   1.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   5.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   7.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    19   9.6  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 0.26
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 212 VINFSNLKAKTKDCTVRMGPSLNPMMVV 295
           VI ++      +  T +MGPS +PM VV
Sbjct: 534 VIQYNTRAENHQTGTAKMGPSYDPMAVV 561


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 215 INFSNLKAKTKDCTVRMGPSLN 280
           + FSN      DCT    P LN
Sbjct: 40  VEFSNSSGAWLDCTATGSPPLN 61


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 215 INFSNLKAKTKDCTVRMGPSLN 280
           + FSN      DCT    P LN
Sbjct: 40  VEFSNSSGAWLDCTATGSPPLN 61


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +1

Query: 196 QRLLRSNQLFKLESKNEGLYCTYGTITESYDGC 294
           Q    SNQL   +S        Y  + ++YD C
Sbjct: 23  QAFAHSNQLIIDKSLKGWKEVEYEVVRDAYDNC 55


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 181 LCEDYQRLLR 210
           +CEDYQ  L+
Sbjct: 291 ICEDYQAFLK 300


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 119 W*RILKGCHIYFQAS 75
           W  IL GC  YF  +
Sbjct: 308 WLYILSGCLYYFSTT 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,334
Number of Sequences: 438
Number of extensions: 1071
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)