Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H10
(594 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal pro... 214 5e-56
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr... 31 0.47
Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical p... 30 1.4
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 29 1.9
Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr... 28 4.4
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ... 28 4.4
AF078789-1|AAK21515.1| 392|Caenorhabditis elegans Hypothetical ... 28 4.4
AL132943-5|CAB81977.1| 367|Caenorhabditis elegans Hypothetical ... 28 5.8
>AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 19 protein.
Length = 198
Score = 214 bits (522), Expect = 5e-56
Identities = 95/158 (60%), Positives = 122/158 (77%)
Frame = +3
Query: 24 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 203
MS+L+LQKRLA++V++CGK +VWLDPNE++EI+ NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1 MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60
Query: 204 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 383
R R+ EARRKGRH G+GKRRGTANARMP+K LW AKK+D+HLY
Sbjct: 61 FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120
Query: 384 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 497
H LY++AKGN FKNK+ L+EYI +KK E R K L+DQ
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158
>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
ZC373.4 protein.
Length = 1211
Score = 31.5 bits (68), Expect = 0.47
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 120 ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 254
++T+S +N+R ++ D +K V H R ++E R+K R G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099
>Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical protein
C01G12.8 protein.
Length = 1049
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 490 LSILVLAFSAFFLWMYSMRTRLFLNTLPFAFMYKE 386
+ L L F AFF+ +Y R F+ T P ++YKE
Sbjct: 1013 IGFLALPF-AFFIGLYDEVRRYFIRTYPGGYIYKE 1046
>Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical
protein C01G12.8 protein.
Length = 1049
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 490 LSILVLAFSAFFLWMYSMRTRLFLNTLPFAFMYKE 386
+ L L F AFF+ +Y R F+ T P ++YKE
Sbjct: 1013 IGFLALPF-AFFIGLYDEVRRYFIRTYPGGYIYKE 1046
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = -1
Query: 546 PRGACGLPSPCCGAPLLGH*AXXXXXXXXXSCGCTP*GHACS*THYPSPSCTRNGRDAC 370
P A P+ CCG+ G CGC G C +Y +P+C G+ AC
Sbjct: 148 PPPAPEAPTQCCGSQPYGR-TPCRSGCPNGDCGC---GRPCC--YYQNPTCCNQGQKAC 200
>Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical
protein ZK1058.5 protein.
Length = 269
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 132 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 245
S +N+RKMIK G V+ + ++ A +R EAR R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208
>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical protein
ZK512.3 protein.
Length = 1418
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 233 ARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGISISD 117
A+ V ++ + + W L++ + +HLT +L I ISD
Sbjct: 1282 AKCQVLVDSQKNIPNEWHLENSSKDEHLTSILKMIGISD 1320
>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
homologous cationchannel protein protein.
Length = 1027
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 233 ARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGISISD 117
A+ V ++ + + W L++ + +HLT +L I ISD
Sbjct: 891 AKCQVLVDSQKNIPNEWHLENSSKDEHLTSILKMIGISD 929
>AF078789-1|AAK21515.1| 392|Caenorhabditis elegans Hypothetical
protein Y44E3B.2 protein.
Length = 392
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 414 HYPSPSCTRNGRDACLSSSLFC 349
+YP P+CTR D C S LFC
Sbjct: 306 YYPRPTCTRENPD-CDSPYLFC 326
>AL132943-5|CAB81977.1| 367|Caenorhabditis elegans Hypothetical
protein Y116F11B.8 protein.
Length = 367
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -2
Query: 332 TEHPLPLNP*FFLWHSSISCTSPLTKATVTSFPARLCVFANTSAGMDSNWFLDDQT 165
TE L P W+S + + T ATVTS F++ +DS+ D T
Sbjct: 238 TEPASTLGPVVIPWNSPGTSSKATTSATVTSLVLGPTTFSSAPQALDSSLAADPST 293
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,384,740
Number of Sequences: 27780
Number of extensions: 249365
Number of successful extensions: 828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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