Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H09
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    31   0.067
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    26   1.9  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    25   3.3  
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    24   7.7  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 31.1 bits (67), Expect = 0.067
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -2

Query: 301 ILSHIFRNFPYGH*LKYIKRIKKMISNILKS--SQRTKQKLFYKV 173
           ILSH+  +FP+G  + ++ +   M+SN + S  +Q   ++LFY +
Sbjct: 771 ILSHVQWDFPHGKNILFVMQRVAMLSNTVSSCFTQAPYERLFYAI 815


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 236 KDDLQYIKIESANKTKVIL*STSEYYDCWQCHT*VPYLS 120
           +D + +I I S  K K  L   SE +DCW     +PY S
Sbjct: 497 RDSIDHITIPS-KKGKGTLHRVSEVFDCWFESGSMPYAS 534


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 167 EYYDCWQCHT*VP 129
           E  DCW CHT  P
Sbjct: 112 EMLDCWSCHTDYP 124


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 221 YIKIESANKTKVIL*STSEYYDCWQCHT*VPYLSLKIFILRIIRYP 84
           Y + ES   + V    TS +   W  H  +P LSL  F  R + YP
Sbjct: 89  YERRESKLVSHVCSLFTSAFVFNWPKHFDIPLLSLPSFDGRAVLYP 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,665
Number of Sequences: 5004
Number of extensions: 28865
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)