Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H09
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0125 + 31850858-31850905,31851032-31851109,31851221-318513...    27   5.6  

>03_06_0125 +
           31850858-31850905,31851032-31851109,31851221-31851337,
           31851346-31851642,31852498-31852509,31852737-31852822,
           31853516-31853660,31853767-31853862,31854333-31854424,
           31854696-31854797,31854891-31855037,31855116-31855266,
           31855418-31855480,31855570-31855806,31856081-31856185,
           31856263-31856376,31856459-31857037,31857279-31857286,
           31857858-31858004,31858077-31858203
          Length = 916

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 301 ILSHIFRNFPYGH*LKYIKRIKKMISNILKSSQRTKQKLFYKVHQ 167
           I +H+ +N   GH   +++  K+MI N+     + K++L  K HQ
Sbjct: 452 IKTHVHKNI--GHLDTHVEDYKRMIDNLQVEVSQLKKELAEKEHQ 494


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,224,182
Number of Sequences: 37544
Number of extensions: 129542
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)