Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H09
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97193-10|AAY55848.1|   71|Caenorhabditis elegans Hypothetical p...    27   5.0  
AL031633-27|CAA21029.2|  385|Caenorhabditis elegans Hypothetical...    27   6.7  

>U97193-10|AAY55848.1|   71|Caenorhabditis elegans Hypothetical
           protein C06A5.12 protein.
          Length = 71

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 176 STSEYYDCWQCHT*VPYLSLKIFILRIIRYPFDVISSHSFY 54
           ST+ Y  C  C   + +L   I +  I+ +P D+ S H F+
Sbjct: 29  STTIYLSC-TCIIIIGFLIAAIVLYVILPFPLDIPSDHEFF 68


>AL031633-27|CAA21029.2|  385|Caenorhabditis elegans Hypothetical
           protein Y39A1A.17 protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 188 LLFCSLTRF*YIGDHLFYSFNIFKLMTVGKI 280
           LL CS+T F Y    +F +FN  K + VG +
Sbjct: 180 LLDCSMTDFVYFIFEVFQNFNSSKTLEVGLV 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,216,237
Number of Sequences: 27780
Number of extensions: 148266
Number of successful extensions: 197
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)