Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H08
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 157 1e-39
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 44 2e-05
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 27 2.3
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 25 5.2
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 6.9
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 6.9
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 6.9
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 6.9
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 9.1
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 9.1
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 25 9.1
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 25 9.1
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb... 25 9.1
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 157 bits (380), Expect = 1e-39
Identities = 72/125 (57%), Positives = 95/125 (76%)
Frame = +3
Query: 150 MFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNV 329
+F+V DNV SQQM +R LRG + ++MGKNTM+R+A++ + P LE+LLP ++GNV
Sbjct: 25 LFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERLLPVVRGNV 84
Query: 330 GFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTK 509
GFVFT DL +VR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTK
Sbjct: 85 GFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTK 144
Query: 510 ISKGT 524
I++GT
Sbjct: 145 ITRGT 149
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 43.6 bits (98), Expect = 2e-05
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Frame = +3
Query: 150 MFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPA--LEKLLPHIKG 323
M+I N+ + +++IR +G S + MGK +M KA+ E A + KL + G
Sbjct: 40 MWIFDVTNMRNTYLKRIRDDWKG-SRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHG 98
Query: 324 NVGFVFTRGDLVDVRDKLLENKVQAP-ARPGAIAPLSVVIPA 446
VG +FT +V E+ VQ AR GA+AP + VIPA
Sbjct: 99 AVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPA 139
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 87 GQGYWNPIT-SLKSSNCWTNTQMFIVGADNVG 179
G+ + P++ S++S N W+NT V DN G
Sbjct: 394 GKNFTTPLSDSVESENTWSNTLRSSVEDDNTG 425
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 36 VLKFLRSPYFTQSKWVGGQGYWN 104
++ +LR YFT S+W+ + N
Sbjct: 461 MVSYLREKYFTPSRWISHLNFQN 483
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 6.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 469 SGPRPVL*AGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRV 341
+G PV + + G++ P AGAW L N L T ++
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 6.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 225 IVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLV 359
I L+G N ++ DH++ +P ++ P+I V ++GDLV
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDLV 443
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 219 HSIVLMGKNTMMRKAIKDHLE 281
HS++ KNT KA+ HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 245 HHDEESHQGPS*NKSSSRKTASSHQG 322
HH+ + S S+SRK A SH G
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQSHTG 456
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 9.1
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +3
Query: 114 SLKSSNCWTNTQMFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPA 293
S++SS+ + + ++ IVGA NVGS + +S IV++ N +KA + ++ N A
Sbjct: 12 SVRSSS-FKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 24.6 bits (51), Expect = 9.1
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -3
Query: 482 ERSLLRTKASVMSGNDDRQWSNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 315
++ +L K + D+R + R LD LQ +I +IST + N +L+
Sbjct: 271 KQEVLILKEKIKKIEDERMRQMSVSSDRTLDSQLQTVNENITRISTSIELKNTALE 326
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -3
Query: 107 WIPVALSSYPFGL 69
W+PV+L++ PFGL
Sbjct: 172 WLPVSLATPPFGL 184
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 24.6 bits (51), Expect = 9.1
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +2
Query: 86 RTRLLESNYFVKIIQLLDEYPNVHSGCGQCRLATDATDPYFIAWSQHCAH 235
+T LL+ V I D+Y V GQ + +TD +F AH
Sbjct: 11 KTHLLDEGLDVSSIHCFDQYLIVGQCSGQVMVFDVSTDNHFTLIQTFIAH 60
>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 138 TNTQMFIVGADNVGSQQMQQIR 203
TN + IVG N+G + + QI+
Sbjct: 6 TNVNVAIVGTGNIGGELLNQIK 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,215
Number of Sequences: 5004
Number of extensions: 50671
Number of successful extensions: 163
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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