Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H07
(211 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 114 2e-27
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 114 2e-27
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 114 2e-27
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 26 0.78
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 1.0
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 1.8
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|... 24 3.2
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 23 4.2
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 23 5.5
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 23 7.3
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 23 7.3
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 23 7.3
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 23 7.3
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p... 22 9.6
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ... 22 9.6
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 22 9.6
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 22 9.6
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 114 bits (274), Expect = 2e-27
Identities = 49/67 (73%), Positives = 58/67 (86%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRFT+HRIT EEAKYKLC V+RV G K VP+LVTHDGRT+RYPDPLIKVND+++L++
Sbjct: 106 KGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLE 165
Query: 189 TNKIMDF 209
TNKI F
Sbjct: 166 TNKIESF 172
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 114 bits (274), Expect = 2e-27
Identities = 49/67 (73%), Positives = 58/67 (86%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRFT+HRIT EEAKYKLC V+RV G K VP+LVTHDGRT+RYPDPLIKVND+++L++
Sbjct: 106 KGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLE 165
Query: 189 TNKIMDF 209
TNKI F
Sbjct: 166 TNKIESF 172
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 114 bits (274), Expect = 2e-27
Identities = 49/67 (73%), Positives = 58/67 (86%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRFT+HRIT EEAKYKLC V+RV G K VP+LVTHDGRT+RYPDPLIKVND+++L++
Sbjct: 106 KGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLE 165
Query: 189 TNKIMDF 209
TNKI F
Sbjct: 166 TNKIESF 172
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 0.78
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 152 HQGERLGAARHLHQQDHGLH 211
H G LGA +H H + G H
Sbjct: 175 HHGPTLGAKQHSHSHEDGAH 194
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.4 bits (53), Expect = 1.0
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -1
Query: 208 KSMILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSL 56
K LL+E+SS E+ T+ S YRS Y L TL L
Sbjct: 661 KIQSLLIELSSHEENLTISSEKIYRSFLSRISEHYNELRNVTTVLGTLDCL 711
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 10 KEGSLSTVSHLKKPSTSCAMCGASRPA 90
KE L + +K S SC++CG R A
Sbjct: 282 KEAVLQKMKEQQKYSCSCSVCGRKRLA 308
>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 23.8 bits (49), Expect = 3.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 66 NVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVND 167
NV VA GP S + DG T + + IK+ D
Sbjct: 394 NVITVADGPCSFSLSIFDDGNTEQTHELAIKIRD 427
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 108 LVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDF 209
L+T D R+ D LIK+ + + DI + +F
Sbjct: 580 LITGDYEDRRFNDGLIKIREYLVNDIEPSTFWEF 613
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 153 IKVNDSVQLDISTNKIMDF 209
+ V DS IST+K+ DF
Sbjct: 65 VPVRDSAVASISTSKVQDF 83
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 86 RPQERAVPGDARRAHAPVPGPAH 154
RP+ERA DA R VP H
Sbjct: 946 RPKERAEESDAAREKFNVPESDH 968
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 190 VEMSSCTESFTLMSGSGYRSVRPSCVT 110
+ S T SFT +S SG+ +V S T
Sbjct: 157 ISSSVSTSSFTSLSSSGFSTVLSSTNT 183
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 105 YLVTHDGRTLRYPDPLIKVNDSVQLDISTNKI 200
+L H+ L+YPDP V D +D+ K+
Sbjct: 978 FLDQHESMYLKYPDP---VKDYACMDVFIAKL 1006
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 110 GDARRAHAPVPGPAHQGERLGAA 178
G +A VPG H+G LG A
Sbjct: 172 GFPSHVNAEVPGAIHEGGELGYA 194
>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 159
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 7 GKEGSLSTVSHLKKPSTS 60
G S STVS +KPS+S
Sbjct: 17 GSNSSSSTVSTTRKPSSS 34
>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 22.2 bits (45), Expect = 9.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVT 116
T K RF + PE+ + NVR A ++P L+T
Sbjct: 175 TDKPRFMMKN-EPEKNSFYFLNVREFAQLKGTLPILIT 211
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 22.2 bits (45), Expect = 9.6
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = +3
Query: 33 ITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNK 197
+T E+ KY +R++ G S+P+ D PD + + + L K
Sbjct: 230 MTKEQHKYIHAMLRQLRRGRDSIPFRAPVDPVKQNIPDYPTIIKNPIDLGTMQKK 284
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 93 KSVPYLVTHDGRTL 134
+S PYLV + GRTL
Sbjct: 342 QSSPYLVPNSGRTL 355
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.122 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 822,316
Number of Sequences: 5004
Number of extensions: 12921
Number of successful extensions: 39
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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