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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H07
         (211 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496...   100   3e-22
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972...    98   1e-21
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31...    97   2e-21
01_05_0674 - 24187820-24188713,24188809-24189204                       29   0.51 
10_08_0510 + 18430580-18431781,18433176-18433554                       29   0.68 
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234...    29   0.68 
01_05_0710 + 24492337-24493053                                         29   0.68 
02_04_0395 + 22590097-22590343,22590566-22590921                       27   1.6  
03_05_0145 + 21254448-21255488                                         27   2.1  
10_03_0002 - 6858257-6861205                                           27   2.7  
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    27   2.7  
03_05_0057 + 20350971-20351405                                         27   2.7  
03_02_0466 - 8690469-8690522,8691008-8691113,8691216-8691457,869...    27   2.7  
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394...    27   2.7  
09_04_0558 - 18504639-18505718                                         26   3.6  
08_01_0220 - 1751367-1752854                                           26   3.6  
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600...    26   3.6  
04_03_0517 + 16712487-16712570,16713715-16714059,16714149-167143...    26   3.6  
08_02_1382 + 26565137-26565210,26565330-26565468,26565489-265656...    26   4.8  
02_04_0415 + 22706964-22707072,22707784-22708077,22708304-227084...    26   4.8  
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354...    25   6.3  
12_01_0337 - 2591689-2593839                                           25   6.3  
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751...    25   6.3  
05_01_0511 + 4256220-4256828,4256920-4257175,4257247-4257309,425...    25   6.3  
01_07_0375 - 43152161-43152262,43152556-43152664,43153433-431535...    25   6.3  
01_07_0046 - 40714701-40714763,40715266-40715343,40716398-407164...    25   6.3  
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759     25   6.3  
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924...    25   6.3  
11_06_0077 - 19843056-19844984                                         25   8.4  
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632...    25   8.4  
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    25   8.4  
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033     25   8.4  
01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546     25   8.4  
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833     25   8.4  

>05_04_0058 +
           17548945-17548947,17549234-17549281,17549618-17549695,
           17549952-17550132,17550223-17550320,17550827-17551258
          Length = 279

 Score = 99.5 bits (237), Expect = 3e-22
 Identities = 41/67 (61%), Positives = 54/67 (80%)
 Frame = +3

Query: 9   KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
           KGRF +H I  E+AK+KLC VR V  G K +P+L T+DGRT+RYPDPLIK ND++++D+ 
Sbjct: 122 KGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLE 181

Query: 189 TNKIMDF 209
           TNKI+DF
Sbjct: 182 TNKIVDF 188


>01_03_0277 +
           14496298-14496300,14496875-14496952,14497061-14497241,
           14497348-14497445,14497542-14497979
          Length = 265

 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 40/67 (59%), Positives = 53/67 (79%)
 Frame = +3

Query: 9   KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
           KGRF +  +  E+AK+KLC VR V  G K +PYL T+DGRT+RYPDPLIK ND++++D+ 
Sbjct: 106 KGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLE 165

Query: 189 TNKIMDF 209
           TNKI+DF
Sbjct: 166 TNKIVDF 172


>02_01_0047 -
           316960-317397,317647-317744,317837-318017,318122-318199,
           319023-319025
          Length = 265

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 39/67 (58%), Positives = 53/67 (79%)
 Frame = +3

Query: 9   KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
           KGRF +  +  E+AK+KLC VR V  G K +PYL T+DGRT+RYPDP+IK ND++++D+ 
Sbjct: 106 KGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLE 165

Query: 189 TNKIMDF 209
           TNKI+DF
Sbjct: 166 TNKIVDF 172


>01_05_0674 - 24187820-24188713,24188809-24189204
          Length = 429

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 71  AARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQD 199
           AA R  P   A    A    AP P P+HQ  ++  +RH    D
Sbjct: 149 AANRRAPAAAAKHRPAADQFAPPPAPSHQWAKIKRSRHATDHD 191


>10_08_0510 + 18430580-18431781,18433176-18433554
          Length = 526

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 202 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 53
           M  L +   CTE+  +      R ++P  +T YGTLL   AT+  L  ++
Sbjct: 193 MDYLCKNGRCTEARKIFDSMTKRGLKPD-ITTYGTLLQGYATKGALVEMH 241


>10_08_0509 +
           18419815-18422150,18422249-18422291,18423154-18423487,
           18423766-18423878,18424461-18424589,18424771-18424864,
           18424967-18425050,18425859-18426047,18426897-18427017,
           18427476-18427692
          Length = 1219

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 202 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 53
           M  L +   CTE+  +      R ++P  +T YGTLL   AT+  L  ++
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPE-ITTYGTLLQGYATKGALVEMH 359


>01_05_0710 + 24492337-24493053
          Length = 238

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -1

Query: 193 LVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWI 23
           L  M + T +F L++   +  +RPS +     LLG + +RR        ++ V+RW+
Sbjct: 93  LASMPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSRRRARE----AASVVRWL 145


>02_04_0395 + 22590097-22590343,22590566-22590921
          Length = 200

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -2

Query: 102 ARSWGRSRRAAHCTACTWLLQV*YGG 25
           ARSW RSRR  H     W L    GG
Sbjct: 47  ARSWIRSRRRGHGVGEAWALAAATGG 72


>03_05_0145 + 21254448-21255488
          Length = 346

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +2

Query: 74  ARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHL 187
           ARR  P++R     A    A  P PA    R G   HL
Sbjct: 120 ARRRTPEQRRPKEAAGNGRARSPSPASAQRRYGGGEHL 157


>10_03_0002 - 6858257-6861205
          Length = 982

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 2   HEERKVHYPPYHT*RSQVQAVQCAARRDRP---QERAVPGDARRAHAPVP 142
           H+ER VH PP H    +V+  +   RR RP   ++  +   A R H   P
Sbjct: 364 HDERSVHSPPDHHRERRVERPRSPPRR-RPVDLRDTIIQRRAARGHHHSP 412


>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 74  ARRDRPQERAVPGDARRA-HAPVPGPAHQGERLGAA 178
           +RR RP+    P DA  A HAP P P  +G + GAA
Sbjct: 106 SRRGRPEP---PSDAGAAPHAP-PSPPRRGAKKGAA 137


>03_05_0057 + 20350971-20351405
          Length = 144

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +2

Query: 56  QAVQCAARRDRPQERAVPGDARRAHAPVPGPAHQGERLG 172
           Q  Q AAR D       P   R + AP PG A    RLG
Sbjct: 29  QPPQAAARPDEAPHHRQPAPDRPSAAPEPGGAGGVARLG 67


>03_02_0466 -
           8690469-8690522,8691008-8691113,8691216-8691457,
           8691477-8691546,8692224-8692499,8693058-8693137,
           8693408-8693489,8693566-8693663,8693868-8693936,
           8694015-8694113,8694681-8694737,8694874-8695039,
           8695152-8695196,8695286-8695347,8695425-8695532,
           8695719-8695769,8695843-8695944,8696362-8696448,
           8696560-8696823,8696977-8697189,8697337-8697398,
           8697517-8697849,8697943-8698138
          Length = 973

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 65  QCAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQDHG 205
           +  A   +P +    G+ +R   P P P  QGE     R++ ++D G
Sbjct: 56  ETTAAPSKPADEVSEGNLKRP--PPPPPPEQGEERSKRRNVDREDSG 100


>01_01_0538 -
           3938389-3939727,3939828-3940203,3940299-3940516,
           3940607-3940769,3940866-3941100,3941186-3941353
          Length = 832

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 9   KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYP 143
           KG+  + +   E  + +  +V R ++ P S PY VT    T RYP
Sbjct: 591 KGKAAMVQCESETERSQTVSVPRTSSVPPSPPYRVTGMYGTPRYP 635


>09_04_0558 - 18504639-18505718
          Length = 359

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 107 PGDARRAHAPVPGPAHQGERLGAARHLHQQD 199
           P     A AP P P+H G +  A+ H+ Q D
Sbjct: 91  PDGRADALAPHPRPSHPGAKCFASAHVRQVD 121


>08_01_0220 - 1751367-1752854
          Length = 495

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
 Frame = +3

Query: 42  EEAKYKLCNVRRVATGPKSVPY-----------LVTHDGRTLRYPDPL 152
           + A  K+C  R V + P+  P            L+ HDGR +  PDPL
Sbjct: 190 QPAFMKICQERHVVSTPEKAPAAPLPRSEYLRPLIFHDGRLVGRPDPL 237


>06_03_0478 -
           21259376-21259465,21259862-21259924,21260025-21260066,
           21260180-21260461,21261084-21261587,21261973-21261981,
           21262122-21262196,21262375-21262449,21262557-21263494,
           21263577-21263607,21263694-21263979,21264691-21264905,
           21265329-21265437,21265556-21265611,21265730-21265822,
           21266348-21266393,21266496-21267221,21267489-21267550,
           21267738-21268013,21268604-21268735,21268835-21268909
          Length = 1394

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 80  RDRPQERAVPGDARRAHAP--VPGPAHQGERLGAARHLHQ 193
           ++R ++R  P D+RR H P   PG   +   + A + L +
Sbjct: 375 KERERDRKHPADSRREHTPPRTPGDRRRSSSVRAEKPLRR 414


>04_03_0517 +
           16712487-16712570,16713715-16714059,16714149-16714301,
           16714889-16714972,16715426-16715479,16715552-16715647,
           16716163-16716258,16716941-16717086,16717650-16717799,
           16717889-16718018,16718128-16718787,16718881-16718979,
           16719058-16719210,16719323-16720054,16720338-16720640
          Length = 1094

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 74  ARRDRPQERAVPGDARRAHAPVPGPAHQGERLG 172
           +RR  P+E   PG +   H+P   P    + LG
Sbjct: 57  SRRRVPKENVDPGSSPAGHSPFRSPTSSAKPLG 89


>08_02_1382 +
           26565137-26565210,26565330-26565468,26565489-26565603,
           26565761-26565828,26565907-26566551,26566927-26567031,
           26567115-26567465
          Length = 498

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 125 AHAPVPGPAHQGERLGAARHLHQQDH 202
           A A +P P   G    A R LHQ  H
Sbjct: 245 ARAAIPAPRRDGAAAHAPRRLHQMMH 270


>02_04_0415 +
           22706964-22707072,22707784-22708077,22708304-22708416,
           22708504-22709002,22709106-22709144,22709228-22709515,
           22709766-22709905,22710468-22710960,22711082-22711356
          Length = 749

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 12  GRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPD 146
           G  T   ITP EA     N+    T   + P +++H+G +  YPD
Sbjct: 325 GVLTDFPITPSEAIGCFSNLNNSKTD-NAKPLIISHNGASGDYPD 368


>12_01_0448 +
           3537661-3538018,3538920-3539047,3539740-3539763,
           3542051-3542317,3542994-3543530
          Length = 437

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 149 AHQGERLGAARHLHQQDHG 205
           A QGE  GAAR +HQ+  G
Sbjct: 399 AAQGELAGAARQVHQRRRG 417


>12_01_0337 - 2591689-2593839
          Length = 716

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 124 PSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFL 5
           P C + Y  +L P+A  + LH+ +  S   I   + LP +
Sbjct: 99  PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLV 138


>06_03_0635 -
           22971502-22973840,22974112-22974403,22974639-22975162,
           22975314-22975583,22976393-22977124,22977226-22977310
          Length = 1413

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +2

Query: 29  PYHT*RSQVQAVQCAARRDRPQERAVPGDARRAHAPVPGPA 151
           P    R    AV+    R RP  R   G   RA A  PG A
Sbjct: 95  PQRRRRQDGAAVRAGDARQRPWHRRQGGPQPRAEAAAPGAA 135


>05_01_0511 +
           4256220-4256828,4256920-4257175,4257247-4257309,
           4257397-4257491
          Length = 340

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = +2

Query: 53  VQAVQCAARRDRPQERAVPGDARRAHAPVPGPAHQGER 166
           V   Q  A   RP     P  A   H P P P H+G R
Sbjct: 255 VDVAQADAAPQRPPRPIGPRPAAHVHRPTP-PPHRGFR 291


>01_07_0375 -
           43152161-43152262,43152556-43152664,43153433-43153504,
           43153690-43153834,43153930-43154085,43154557-43154618,
           43154695-43155020
          Length = 323

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 181 SSCTESFTLMSGSGYRSV 128
           SSC  SF L+  SGY+ V
Sbjct: 54  SSCPNSFLLVGSSGYKQV 71


>01_07_0046 -
           40714701-40714763,40715266-40715343,40716398-40716462,
           40717075-40717201,40717279-40717319,40717621-40717690,
           40718070-40718191,40719047-40719107,40719182-40719292,
           40719387-40719461,40719815-40719842,40719929-40719978,
           40720228-40720290,40720385-40720426,40720562-40720631,
           40720663-40720713,40721857-40722041,40722374-40722775
          Length = 567

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = +2

Query: 47  SQVQAVQCAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARH 184
           +QV A Q AA      +     D    H P P PA  G    AA H
Sbjct: 71  AQVMASQSAAAAAGRDDDDDDDDYANDHPPAPPPARFGSARPAAAH 116


>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
          Length = 428

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 71  AARRDRPQERAVPGDARRAHAPVPG 145
           A RR R  E+A+P   +   AP PG
Sbjct: 7   AKRRKRQPEKALPAAGQAMPAPAPG 31


>01_05_0346 +
           21191542-21191783,21191988-21192072,21192159-21192422,
           21192518-21192820,21193695-21193799,21193916-21194020,
           21194613-21194712,21195614-21195933,21196183-21196359,
           21196432-21196560,21196592-21196636,21196851-21197078
          Length = 700

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 26  PPYHT*RSQVQAVQCAARRDRPQERAVPG--DARRAHAPVPGPA 151
           PP H   +   A  C +RR+    RA P   +A +A  P P P+
Sbjct: 17  PPPHPTPAAAAAAACCSRRNISCARAAPRALEAPQASRPPPRPS 60


>11_06_0077 - 19843056-19844984
          Length = 642

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 112 TRYGTLLGPVATRRTLHSLYLASSGVI 32
           TR+G  +G V     +HS++L+S  +I
Sbjct: 120 TRFGIAIGCVEALSYMHSMHLSSGNLI 146


>06_03_0640 - 23059473-23060489,23060592-23060651,23063163-23063283,
            23063476-23065496
          Length = 1072

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 134  PVPGPAHQGERLGAARHLHQQDH 202
            P PGP HQ       +H  QQ H
Sbjct: 955  PPPGPVHQQMHAYHQQHQQQQQH 977


>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +2

Query: 56  QAVQCAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQ 193
           QA +  ++RD+ ++++  G + +   P P  +     L A  ++HQ
Sbjct: 512 QAAKDVSKRDKKKKKSSKGPSTKKAKPTPATSSAVPELLAQTNVHQ 557


>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
          Length = 1614

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 13   EGSLSTVSHLKKPSTSCAMCGASRPAPR 96
            EG      HL +P+TS A+C ++   PR
Sbjct: 1144 EGIPGDEGHLSEPATSPAVCSSAIHLPR 1171


>01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546
          Length = 532

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 60  LCNVRRVATGPKS--VPYLVTHDGRTLRYPDPLI 155
           L   R+ +  PK+  +  L+ HDGR ++ P PL+
Sbjct: 244 LVTSRKYSAVPKNQLLSPLILHDGRLVQRPTPLV 277


>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
          Length = 503

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 32  YHT*RSQVQAVQCAARRDRPQERAVPGDARRAHAPVPGPAHQ 157
           +H   ++  A    ++   P  R  PG AR   AP P P  +
Sbjct: 37  HHAKHAKRNAAHPPSQAPGPAARHAPGPARHHGAPAPHPGRR 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.122    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,151,438
Number of Sequences: 37544
Number of extensions: 114186
Number of successful extensions: 510
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)

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