Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H07
(211 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M58458-1|AAA63255.1| 263|Homo sapiens ribosomal protein S4X iso... 115 3e-26
M22146-1|AAA36597.1| 244|Homo sapiens protein ( Human scar prot... 115 3e-26
CR456735-1|CAG33016.1| 263|Homo sapiens RPS4X protein. 115 3e-26
BC100904-1|AAI00905.1| 263|Homo sapiens RPS4X protein protein. 115 3e-26
BC100903-1|AAI00904.1| 263|Homo sapiens RPS4X protein protein. 115 3e-26
BC071662-1|AAH71662.1| 263|Homo sapiens ribosomal protein S4, X... 115 3e-26
BC007308-1|AAH07308.2| 243|Homo sapiens RPS4X protein protein. 115 3e-26
BC000472-1|AAH00472.1| 263|Homo sapiens ribosomal protein S4, X... 115 3e-26
AK222479-1|BAD96199.1| 263|Homo sapiens ribosomal protein S4, X... 115 3e-26
AF041428-1|AAB96968.1| 263|Homo sapiens ribosomal protein s4 X ... 115 3e-26
M58459-1|AAA63256.1| 263|Homo sapiens ribosomal protein S4Y iso... 109 1e-24
BC100906-1|AAI00907.1| 262|Homo sapiens RPS4Y1 protein protein. 109 1e-24
BC100905-1|AAI00906.1| 263|Homo sapiens ribosomal protein S4, Y... 109 1e-24
BC010286-1|AAH10286.1| 263|Homo sapiens ribosomal protein S4, Y... 109 1e-24
AK222594-1|BAD96314.1| 263|Homo sapiens ribosomal protein S4, Y... 109 1e-24
AF041427-1|AAB96967.1| 263|Homo sapiens ribosomal protein s4 Y ... 109 1e-24
AF497481-1|AAM18074.1| 263|Homo sapiens ribosomal protein S4 pr... 107 8e-24
AK096970-1|BAC04915.1| 485|Homo sapiens protein ( Homo sapiens ... 32 0.39
U14518-1|AAA57416.1| 140|Homo sapiens centromere protein-A prot... 31 0.89
BT007246-1|AAP35910.1| 140|Homo sapiens centromere protein A, 1... 31 0.89
BC046248-1|AAH46248.1| 503|Homo sapiens similar to CG32656-PA p... 31 0.89
BC002703-1|AAH02703.1| 140|Homo sapiens CENPA protein protein. 31 0.89
BC000881-1|AAH00881.1| 114|Homo sapiens centromere protein A pr... 31 0.89
AC011740-3|AAX93267.1| 140|Homo sapiens unknown protein. 31 0.89
AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein. 28 4.8
AF333072-2|AAL60056.1| 702|Homo sapiens pol protein protein. 28 4.8
AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein. 28 4.8
AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein. 28 4.8
AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein pro... 28 4.8
AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein pro... 28 4.8
AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein... 28 4.8
AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein. 28 4.8
AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein. 28 4.8
AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein. 28 4.8
AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein. 28 4.8
AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein. 28 4.8
AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein. 28 4.8
AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein. 28 4.8
U88047-1|AAC32888.1| 593|Homo sapiens DNA binding protein homol... 28 6.3
BC060828-1|AAH60828.1| 593|Homo sapiens AT rich interactive dom... 28 6.3
BC033163-1|AAH33163.1| 443|Homo sapiens ARID3A protein protein. 28 6.3
AY845638-1|AAW30734.1| 589|Homo sapiens DRIL3 protein. 28 6.3
AY152547-1|AAN74028.1| 593|Homo sapiens E2F binding protein pro... 28 6.3
AF039850-1|AAC69994.1| 593|Homo sapiens dead ringer like 1 prot... 28 6.3
AC005379-1|AAC28499.1| 231|Homo sapiens DRIL1 DNA binding prote... 28 6.3
BC113021-1|AAI13022.1| 72|Homo sapiens keratin associated prot... 27 8.3
BC113020-1|AAI13021.1| 72|Homo sapiens keratin associated prot... 27 8.3
BC100839-1|AAI00840.1| 72|Homo sapiens keratin associated prot... 27 8.3
BC100838-1|AAI00839.1| 72|Homo sapiens keratin associated prot... 27 8.3
BC100837-1|AAI00838.1| 72|Homo sapiens keratin associated prot... 27 8.3
BC100836-1|AAI00837.1| 72|Homo sapiens keratin associated prot... 27 8.3
AY534241-1|AAT07090.1| 650|Homo sapiens XK-related protein 4 pr... 27 8.3
AL161779-2|CAI42091.1| 1478|Homo sapiens IQ motif and Sec7 domai... 27 8.3
AL139396-1|CAI39832.1| 1478|Homo sapiens IQ motif and Sec7 domai... 27 8.3
AB096946-1|BAE46361.1| 72|Homo sapiens keratin associated prot... 27 8.3
AB067476-1|BAB67782.1| 505|Homo sapiens KIAA1889 protein protein. 27 8.3
AB011094-1|BAA25448.1| 1560|Homo sapiens KIAA0522 protein protein. 27 8.3
>M58458-1|AAA63255.1| 263|Homo sapiens ribosomal protein S4X
isoform protein.
Length = 263
Score = 115 bits (276), Expect = 3e-26
Identities = 47/67 (70%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRITPEEAKYKLC VR++ G K +P+LVTHD RT+RYPDPLIKVND++Q+D+
Sbjct: 106 KGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLE 165
Query: 189 TNKIMDF 209
T KI DF
Sbjct: 166 TGKITDF 172
>M22146-1|AAA36597.1| 244|Homo sapiens protein ( Human scar protein
mRNA, complete cds. ).
Length = 244
Score = 115 bits (276), Expect = 3e-26
Identities = 47/67 (70%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRITPEEAKYKLC VR++ G K +P+LVTHD RT+RYPDPLIKVND++Q+D+
Sbjct: 87 KGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLE 146
Query: 189 TNKIMDF 209
T KI DF
Sbjct: 147 TGKITDF 153
>CR456735-1|CAG33016.1| 263|Homo sapiens RPS4X protein.
Length = 263
Score = 115 bits (276), Expect = 3e-26
Identities = 47/67 (70%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRITPEEAKYKLC VR++ G K +P+LVTHD RT+RYPDPLIKVND++Q+D+
Sbjct: 106 KGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLE 165
Query: 189 TNKIMDF 209
T KI DF
Sbjct: 166 TGKITDF 172
>BC100904-1|AAI00905.1| 263|Homo sapiens RPS4X protein protein.
Length = 263
Score = 115 bits (276), Expect = 3e-26
Identities = 47/67 (70%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRITPEEAKYKLC VR++ G K +P+LVTHD RT+RYPDPLIKVND++Q+D+
Sbjct: 106 KGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLE 165
Query: 189 TNKIMDF 209
T KI DF
Sbjct: 166 TGKITDF 172
>BC100903-1|AAI00904.1| 263|Homo sapiens RPS4X protein protein.
Length = 263
Score = 115 bits (276), Expect = 3e-26
Identities = 47/67 (70%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRITPEEAKYKLC VR++ G K +P+LVTHD RT+RYPDPLIKVND++Q+D+
Sbjct: 106 KGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLE 165
Query: 189 TNKIMDF 209
T KI DF
Sbjct: 166 TGKITDF 172
>BC071662-1|AAH71662.1| 263|Homo sapiens ribosomal protein S4,
X-linked protein.
Length = 263
Score = 115 bits (276), Expect = 3e-26
Identities = 47/67 (70%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRITPEEAKYKLC VR++ G K +P+LVTHD RT+RYPDPLIKVND++Q+D+
Sbjct: 106 KGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLE 165
Query: 189 TNKIMDF 209
T KI DF
Sbjct: 166 TGKITDF 172
>BC007308-1|AAH07308.2| 243|Homo sapiens RPS4X protein protein.
Length = 243
Score = 115 bits (276), Expect = 3e-26
Identities = 47/67 (70%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRITPEEAKYKLC VR++ G K +P+LVTHD RT+RYPDPLIKVND++Q+D+
Sbjct: 86 KGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLE 145
Query: 189 TNKIMDF 209
T KI DF
Sbjct: 146 TGKITDF 152
>BC000472-1|AAH00472.1| 263|Homo sapiens ribosomal protein S4,
X-linked protein.
Length = 263
Score = 115 bits (276), Expect = 3e-26
Identities = 47/67 (70%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRITPEEAKYKLC VR++ G K +P+LVTHD RT+RYPDPLIKVND++Q+D+
Sbjct: 106 KGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLE 165
Query: 189 TNKIMDF 209
T KI DF
Sbjct: 166 TGKITDF 172
>AK222479-1|BAD96199.1| 263|Homo sapiens ribosomal protein S4,
X-linked X isoform variant protein.
Length = 263
Score = 115 bits (276), Expect = 3e-26
Identities = 47/67 (70%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRITPEEAKYKLC VR++ G K +P+LVTHD RT+RYPDPLIKVND++Q+D+
Sbjct: 106 KGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLE 165
Query: 189 TNKIMDF 209
T KI DF
Sbjct: 166 TGKITDF 172
>AF041428-1|AAB96968.1| 263|Homo sapiens ribosomal protein s4 X
isoform protein.
Length = 263
Score = 115 bits (276), Expect = 3e-26
Identities = 47/67 (70%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRITPEEAKYKLC VR++ G K +P+LVTHD RT+RYPDPLIKVND++Q+D+
Sbjct: 106 KGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLE 165
Query: 189 TNKIMDF 209
T KI DF
Sbjct: 166 TGKITDF 172
>M58459-1|AAA63256.1| 263|Homo sapiens ribosomal protein S4Y
isoform protein.
Length = 263
Score = 109 bits (263), Expect = 1e-24
Identities = 45/67 (67%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRIT EEAKYKLC VR++ G K +P+LVTHD RT+RYPDP+IKVND+VQ+D+
Sbjct: 106 KGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLG 165
Query: 189 TNKIMDF 209
T KI++F
Sbjct: 166 TGKIINF 172
>BC100906-1|AAI00907.1| 262|Homo sapiens RPS4Y1 protein protein.
Length = 262
Score = 109 bits (263), Expect = 1e-24
Identities = 45/67 (67%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRIT EEAKYKLC VR++ G K +P+LVTHD RT+RYPDP+IKVND+VQ+D+
Sbjct: 105 KGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLG 164
Query: 189 TNKIMDF 209
T KI++F
Sbjct: 165 TGKIINF 171
>BC100905-1|AAI00906.1| 263|Homo sapiens ribosomal protein S4,
Y-linked 1 protein.
Length = 263
Score = 109 bits (263), Expect = 1e-24
Identities = 45/67 (67%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRIT EEAKYKLC VR++ G K +P+LVTHD RT+RYPDP+IKVND+VQ+D+
Sbjct: 106 KGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLG 165
Query: 189 TNKIMDF 209
T KI++F
Sbjct: 166 TGKIINF 172
>BC010286-1|AAH10286.1| 263|Homo sapiens ribosomal protein S4,
Y-linked 1 protein.
Length = 263
Score = 109 bits (263), Expect = 1e-24
Identities = 45/67 (67%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRIT EEAKYKLC VR++ G K +P+LVTHD RT+RYPDP+IKVND+VQ+D+
Sbjct: 106 KGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLG 165
Query: 189 TNKIMDF 209
T KI++F
Sbjct: 166 TGKIINF 172
>AK222594-1|BAD96314.1| 263|Homo sapiens ribosomal protein S4,
Y-linked 1 Y isoform variant protein.
Length = 263
Score = 109 bits (263), Expect = 1e-24
Identities = 45/67 (67%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRIT EEAKYKLC VR++ G K +P+LVTHD RT+RYPDP+IKVND+VQ+D+
Sbjct: 106 KGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLG 165
Query: 189 TNKIMDF 209
T KI++F
Sbjct: 166 TGKIINF 172
>AF041427-1|AAB96967.1| 263|Homo sapiens ribosomal protein s4 Y
isoform protein.
Length = 263
Score = 109 bits (263), Expect = 1e-24
Identities = 45/67 (67%), Positives = 57/67 (85%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGRF +HRIT EEAKYKLC VR++ G K +P+LVTHD RT+RYPDP+IKVND+VQ+D+
Sbjct: 106 KGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLG 165
Query: 189 TNKIMDF 209
T KI++F
Sbjct: 166 TGKIINF 172
>AF497481-1|AAM18074.1| 263|Homo sapiens ribosomal protein S4
protein.
Length = 263
Score = 107 bits (256), Expect = 8e-24
Identities = 45/67 (67%), Positives = 54/67 (80%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KG F +HRIT EEAKYKLC VR++ G K +P+LVTHD RT+RYPDPLIKVND+VQ+D+
Sbjct: 106 KGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLG 165
Query: 189 TNKIMDF 209
T KI F
Sbjct: 166 TGKITSF 172
>AK096970-1|BAC04915.1| 485|Homo sapiens protein ( Homo sapiens
cDNA FLJ39651 fis, clone SMINT2005161, highly similar to
Mus musculus ES18 mRNA. ).
Length = 485
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = +2
Query: 80 RDRPQERAVPGDARRAHAPVPGPAHQGERLGAAR 181
RDR AV G RRA PVP H G LG R
Sbjct: 142 RDRQWLEAVFGTPRRAGCPVPQRTHAGPSLGEVR 175
>U14518-1|AAA57416.1| 140|Homo sapiens centromere protein-A
protein.
Length = 140
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 80 RDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQ 196
R R ++ P + P PGP+ +G LGA+ H H +
Sbjct: 4 RRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSR 42
>BT007246-1|AAP35910.1| 140|Homo sapiens centromere protein A,
17kDa protein.
Length = 140
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 80 RDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQ 196
R R ++ P + P PGP+ +G LGA+ H H +
Sbjct: 4 RRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSR 42
>BC046248-1|AAH46248.1| 503|Homo sapiens similar to CG32656-PA
protein.
Length = 503
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 86 RPQERAVPGDARRAHAPVPGPAHQG 160
R + PG ARR A VPGPA +G
Sbjct: 257 RLSPESAPGPARRGRASVPGPARRG 281
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 74 ARRDRPQERAVPGDARRAHAPVPGPAHQG 160
ARR R +VPG ARR PGPA +G
Sbjct: 267 ARRGRA---SVPGPARRGCDSAPGPARRG 292
>BC002703-1|AAH02703.1| 140|Homo sapiens CENPA protein protein.
Length = 140
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 80 RDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQ 196
R R ++ P + P PGP+ +G LGA+ H H +
Sbjct: 4 RRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSR 42
>BC000881-1|AAH00881.1| 114|Homo sapiens centromere protein A
protein.
Length = 114
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 80 RDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQ 196
R R ++ P + P PGP+ +G LGA+ H H +
Sbjct: 4 RRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSR 42
>AC011740-3|AAX93267.1| 140|Homo sapiens unknown protein.
Length = 140
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 80 RDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQ 196
R R ++ P + P PGP+ +G LGA+ H H +
Sbjct: 4 RRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSR 42
>AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein.
Length = 727
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 182
TR + + + ++ +L N+ + ++ P+ +TH P PL K N+ L
Sbjct: 388 TRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITHIRAHTNLPGPLTKANEEADLL 447
Query: 183 IST 191
+S+
Sbjct: 448 VSS 450
>AF333072-2|AAL60056.1| 702|Homo sapiens pol protein protein.
Length = 702
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 182
TR + + + ++ +L N+ + ++ P+ +TH P PL K N+ L
Sbjct: 415 TRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITHIRAHTNLPGPLTKANEQADLL 474
Query: 183 IST 191
+S+
Sbjct: 475 VSS 477
>AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 182
TR + + + ++ +L N+ + ++ P+ +TH P PL K N+ L
Sbjct: 525 TRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITHIRAHTNLPGPLTKANEQADLL 584
Query: 183 IST 191
+S+
Sbjct: 585 VSS 587
>AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 182
TR + + + ++ +L N+ + ++ P+ +TH P PL K N+ L
Sbjct: 525 TRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITHIRAHTNLPGPLTKANEQADLL 584
Query: 183 IST 191
+S+
Sbjct: 585 VSS 587
>AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1879
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 182
TR + + + ++ +L N+ + ++ P+ +TH P PL K N+ L
Sbjct: 1448 TRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITHIRAHTNLPGPLTKANEQADLL 1507
Query: 183 IST 191
+S+
Sbjct: 1508 VSS 1510
>AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1755
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 182
TR + + + ++ +L N+ + ++ P+ +TH P PL K N+ L
Sbjct: 1448 TRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITHIRAHTNLPGPLTKANEQADLL 1507
Query: 183 IST 191
+S+
Sbjct: 1508 VSS 1510
>AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein
protein.
Length = 2294
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 182
TR + + + ++ +L N+ + ++ P+ +TH P PL K N+ L
Sbjct: 1448 TRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITHIRAHTNLPGPLTKANEQADLL 1507
Query: 183 IST 191
+S+
Sbjct: 1508 VSS 1510
>AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 182
TR + + + ++ +L N+ + ++ P+ +TH P PL K N+ L
Sbjct: 508 TRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITHIRAHTNLPGPLTKANEQADLL 567
Query: 183 IST 191
+S+
Sbjct: 568 VSS 570
>AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 182
TR + + + ++ +L N+ + ++ P+ +TH P PL K N+ L
Sbjct: 508 TRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITHIQAHTNLPGPLTKANEQADLL 567
Query: 183 IST 191
+S+
Sbjct: 568 VSS 570
>AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 182
TR + + + ++ +L N+ + ++ P+ +TH P PL K N+ L
Sbjct: 508 TRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITHIRAHTNLPGPLTKANEEADLL 567
Query: 183 IST 191
+S+
Sbjct: 568 VSS 570
>AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein.
Length = 596
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 182
TR + + + ++ +L N+ + ++ P+ +TH P PL K N+ L
Sbjct: 524 TRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITHIRAHTNLPGPLTKANEQADLL 583
Query: 183 IST 191
+S+
Sbjct: 584 VSS 586
>AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein.
Length = 597
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 182
TR + + + ++ +L N+ + ++ P+ +TH P PL K N+ L
Sbjct: 525 TRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITHIRAHTNLPGPLTKANEEADLL 584
Query: 183 IST 191
+S+
Sbjct: 585 VSS 587
>AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 182
TR + + + ++ +L N+ + ++ P+ +TH P PL K N+ L
Sbjct: 525 TRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITHIRAHTNLPGPLTKANEQADLL 584
Query: 183 IST 191
+S+
Sbjct: 585 VSS 587
>AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 182
TR + + + ++ +L N+ + ++ P+ +TH P PL K N+ L
Sbjct: 525 TRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITHIRAHTNLPGPLTKANEQADLL 584
Query: 183 IST 191
+S+
Sbjct: 585 VSS 587
>U88047-1|AAC32888.1| 593|Homo sapiens DNA binding protein homolog
protein.
Length = 593
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 134 PVPGPAHQGERLGAARHLHQQDHG 205
P PGPAH G A L DHG
Sbjct: 198 PGPGPAHPGGAAHVAPQLQPPDHG 221
>BC060828-1|AAH60828.1| 593|Homo sapiens AT rich interactive domain
3A (BRIGHT-like) protein.
Length = 593
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 134 PVPGPAHQGERLGAARHLHQQDHG 205
P PGPAH G A L DHG
Sbjct: 198 PGPGPAHPGGAAHVAPQLQPPDHG 221
>BC033163-1|AAH33163.1| 443|Homo sapiens ARID3A protein protein.
Length = 443
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 134 PVPGPAHQGERLGAARHLHQQDHG 205
P PGPAH G A L DHG
Sbjct: 48 PGPGPAHPGGAAHVAPQLQPPDHG 71
>AY845638-1|AAW30734.1| 589|Homo sapiens DRIL3 protein.
Length = 589
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 134 PVPGPAHQGERLGAARHLHQQDHG 205
P PGPAH G A L DHG
Sbjct: 198 PGPGPAHPGGAAHVAPQLQPPDHG 221
>AY152547-1|AAN74028.1| 593|Homo sapiens E2F binding protein
protein.
Length = 593
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 134 PVPGPAHQGERLGAARHLHQQDHG 205
P PGPAH G A L DHG
Sbjct: 198 PGPGPAHPGGAAHVAPQLQPPDHG 221
>AF039850-1|AAC69994.1| 593|Homo sapiens dead ringer like 1 protein
protein.
Length = 593
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 134 PVPGPAHQGERLGAARHLHQQDHG 205
P PGPAH G A L DHG
Sbjct: 198 PGPGPAHPGGAAHVAPQLQPPDHG 221
>AC005379-1|AAC28499.1| 231|Homo sapiens DRIL1 DNA binding protein
homolog protein.
Length = 231
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 134 PVPGPAHQGERLGAARHLHQQDHG 205
P PGPAH G A L DHG
Sbjct: 198 PGPGPAHPGGAAHVAPQLQPPDHG 221
>BC113021-1|AAI13022.1| 72|Homo sapiens keratin associated protein
19-5 protein.
Length = 72
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 148 GSGYRSVRPSCVTRYG 101
G GYRS RPSC YG
Sbjct: 52 GYGYRSCRPSCYGGYG 67
>BC113020-1|AAI13021.1| 72|Homo sapiens keratin associated protein
19-5 protein.
Length = 72
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 148 GSGYRSVRPSCVTRYG 101
G GYRS RPSC YG
Sbjct: 52 GYGYRSCRPSCYGGYG 67
>BC100839-1|AAI00840.1| 72|Homo sapiens keratin associated protein
19-5 protein.
Length = 72
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 148 GSGYRSVRPSCVTRYG 101
G GYRS RPSC YG
Sbjct: 52 GYGYRSCRPSCYGGYG 67
>BC100838-1|AAI00839.1| 72|Homo sapiens keratin associated protein
19-5 protein.
Length = 72
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 148 GSGYRSVRPSCVTRYG 101
G GYRS RPSC YG
Sbjct: 52 GYGYRSCRPSCYGGYG 67
>BC100837-1|AAI00838.1| 72|Homo sapiens keratin associated protein
19-5 protein.
Length = 72
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 148 GSGYRSVRPSCVTRYG 101
G GYRS RPSC YG
Sbjct: 52 GYGYRSCRPSCYGGYG 67
>BC100836-1|AAI00837.1| 72|Homo sapiens keratin associated protein
19-5 protein.
Length = 72
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 148 GSGYRSVRPSCVTRYG 101
G GYRS RPSC YG
Sbjct: 52 GYGYRSCRPSCYGGYG 67
>AY534241-1|AAT07090.1| 650|Homo sapiens XK-related protein 4
protein.
Length = 650
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 114 SPGTARSWGRSRRAAHCTACTWLLQ 40
S G R+ G+ R+A C+ C WLLQ
Sbjct: 233 SSGATRASGK-HRSASCSFCIWLLQ 256
>AL161779-2|CAI42091.1| 1478|Homo sapiens IQ motif and Sec7 domain 2
protein.
Length = 1478
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Frame = +2
Query: 125 AHAPVPGPAH-------QGERLGAARHLHQQDHGLH 211
AH PVPGP H + R GA H HG H
Sbjct: 1314 AHGPVPGPQHYTLGRPGRAPRRGAGGHPQFAPHGRH 1349
>AL139396-1|CAI39832.1| 1478|Homo sapiens IQ motif and Sec7 domain 2
protein.
Length = 1478
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Frame = +2
Query: 125 AHAPVPGPAH-------QGERLGAARHLHQQDHGLH 211
AH PVPGP H + R GA H HG H
Sbjct: 1314 AHGPVPGPQHYTLGRPGRAPRRGAGGHPQFAPHGRH 1349
>AB096946-1|BAE46361.1| 72|Homo sapiens keratin associated protein
protein.
Length = 72
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 148 GSGYRSVRPSCVTRYG 101
G GYRS RPSC YG
Sbjct: 52 GYGYRSCRPSCYGGYG 67
>AB067476-1|BAB67782.1| 505|Homo sapiens KIAA1889 protein protein.
Length = 505
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 114 SPGTARSWGRSRRAAHCTACTWLLQ 40
S G R+ G+ R+A C+ C WLLQ
Sbjct: 88 SSGATRASGK-HRSASCSFCIWLLQ 111
>AB011094-1|BAA25448.1| 1560|Homo sapiens KIAA0522 protein protein.
Length = 1560
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Frame = +2
Query: 125 AHAPVPGPAH-------QGERLGAARHLHQQDHGLH 211
AH PVPGP H + R GA H HG H
Sbjct: 1391 AHGPVPGPQHYTLGRPGRAPRRGAGGHPQFAPHGRH 1426
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.314 0.122 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,520,028
Number of Sequences: 237096
Number of extensions: 599411
Number of successful extensions: 3588
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 3528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3588
length of database: 76,859,062
effective HSP length: 48
effective length of database: 65,478,454
effective search space used: 1375047534
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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