Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H07
(211 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 85 5e-18
Z75542-1|CAA99859.1| 141|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical pr... 27 1.4
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 27 1.4
AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid deplete... 27 1.4
AF077536-7|AAT81207.1| 570|Caenorhabditis elegans Hypothetical ... 27 1.8
AC024747-3|AAK85498.2| 318|Caenorhabditis elegans Hypothetical ... 26 3.2
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 25 5.6
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ... 25 5.6
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 25 7.3
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z68296-1|CAA92589.2| 520|Caenorhabditis elegans Hypothetical pr... 25 7.3
U58754-5|AAB00672.2| 330|Caenorhabditis elegans Serpentine rece... 25 7.3
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 25 7.3
Z81136-4|CAI46577.1| 738|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z70718-9|CAA94678.2| 371|Caenorhabditis elegans Hypothetical pr... 25 9.7
AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical ... 25 9.7
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 25 9.7
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 85.4 bits (202), Expect = 5e-18
Identities = 38/66 (57%), Positives = 47/66 (71%)
Frame = +3
Query: 9 KGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIS 188
KGR+ +HRI EA +KLC V+ V T K VP L T DGRT+RYPDP +KVND++ +IS
Sbjct: 105 KGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNIS 164
Query: 189 TNKIMD 206
T KI D
Sbjct: 165 TQKITD 170
>Z75542-1|CAA99859.1| 141|Caenorhabditis elegans Hypothetical
protein F55D12.1 protein.
Length = 141
Score = 27.9 bits (59), Expect = 1.0
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +2
Query: 8 ERKVHYPPYHT*RSQVQAVQCAARRD-RPQERAVPGDARRAHAPVPGPAHQGERLGAA-- 178
ERK +PP + + + V C RR+ QE++ P R P P + E A
Sbjct: 12 ERKSPHPPQNVISERREFVSCEYRREPLHQEQSRPSSILRNPLPQSHPYEERENARLACE 71
Query: 179 -RHLHQQDHG 205
R Q +HG
Sbjct: 72 YRRDQQSEHG 81
>Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical
protein T11F9.10 protein.
Length = 325
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 25 STVSHLK-KPSTSCAMCGASRP 87
+TV HL +P TSCA C ++RP
Sbjct: 19 TTVLHLHIRPPTSCATCTSNRP 40
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = +3
Query: 12 GRFTIHRITPEEAKYKLCNVRRVATGPKSVP-----YLVTHDGRTLR-YP 143
G+ + R+T E Y+ C +++ A K VP Y+V H R ++ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid depleted
protein 5 protein.
Length = 176
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 72 RRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMD 206
R ++TG ++P +HD + + D L K + + +S+++ MD
Sbjct: 18 RCLSTGKDNLPVTRSHDAKKVELNDILDKPSQKTPVKVSSDETMD 62
>AF077536-7|AAT81207.1| 570|Caenorhabditis elegans Hypothetical
protein C16A11.2a protein.
Length = 570
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 181 SSC-TESFTLMSGSGYRSVRPSCVTRYGTLLGPV 83
S+C + ++S SGY R SC+ Y ++G +
Sbjct: 15 SNCRNDIIAMLSASGYHRARVSCLNDYDKIVGGI 48
>AC024747-3|AAK85498.2| 318|Caenorhabditis elegans Hypothetical
protein Y110A2AM.1 protein.
Length = 318
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +2
Query: 5 EERKVHYPPYHT*RSQVQAVQCAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGA 175
+E + H ++++A A RR+R + A DARRA A A GE+L A
Sbjct: 136 QEARAHARRADARDARLEAAAAADRRERFLQEAQEADARRA-ADGDARAELGEQLRA 191
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -1
Query: 187 EMSSCTESFTLMSGSGYRSVRPSCVT 110
++++ +++FT M G+RS SCV+
Sbjct: 789 DLTTSSDNFTCMCAQGFRSEGRSCVS 814
>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
protein Y38C1AB.4 protein.
Length = 1393
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 3 TRKGRFTIHRITPEEAKYKLCNVRRVATGPKS 98
T+K R ++HR+ EA +L N ++V +S
Sbjct: 514 TKKKRISLHRVEDTEAVVELLNGQKVEVACRS 545
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 26 PPYHT*RSQVQAVQCAARRDRPQERAVPGDARRAHAP 136
PP RS Q+ A +R + + ++ P ARR +P
Sbjct: 315 PPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSP 351
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 99 VPYLVTHDGRTLRYPDPLI 155
+P+ + +D T RYPDP++
Sbjct: 3852 IPFRLLYDYLTARYPDPVM 3870
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 99 VPYLVTHDGRTLRYPDPLI 155
+P+ + +D T RYPDP++
Sbjct: 3863 IPFRLLYDYLTARYPDPVM 3881
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 99 VPYLVTHDGRTLRYPDPLI 155
+P+ + +D T RYPDP++
Sbjct: 3863 IPFRLLYDYLTARYPDPVM 3881
>Z68296-1|CAA92589.2| 520|Caenorhabditis elegans Hypothetical
protein C46C2.2 protein.
Length = 520
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/59 (20%), Positives = 25/59 (42%)
Frame = -1
Query: 181 SSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFL 5
SS F + G++ RP+ V G L+G + + + ++ ++ +P L
Sbjct: 92 SSAAMEFEIYCRPGWKDFRPAFVQYVGVLIGNIILGYVADQIGRKKTFILSMLIGIPSL 150
>U58754-5|AAB00672.2| 330|Caenorhabditis elegans Serpentine
receptor, class sx protein14 protein.
Length = 330
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 127 RPSCVTRYGTLLGPVATRRTLHSLY 53
+ S T+YG +LG +AT TL LY
Sbjct: 39 KKSLRTKYGCILGILATLHTLCLLY 63
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 99 VPYLVTHDGRTLRYPDPLI 155
+P+ + +D T RYPDP++
Sbjct: 3863 IPFRLLYDYLTARYPDPVM 3881
>Z81136-4|CAI46577.1| 738|Caenorhabditis elegans Hypothetical
protein W02B8.6 protein.
Length = 738
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +3
Query: 42 EEAKYKLCNVRR-----VATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 182
E+A++KL + +R + GP P T + T R+P K+ +LD
Sbjct: 432 EDAEHKLIDAQRKKDDAMGRGPDGQPLYFTKENITERFPSEARKIELMEKLD 483
>Z70718-9|CAA94678.2| 371|Caenorhabditis elegans Hypothetical
protein C04G2.9 protein.
Length = 371
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 49 PSTSCAMCGASRPAPR 96
P CA+CGA+ P P+
Sbjct: 171 PHCPCAVCGAAPPPPK 186
>AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical
protein Y39B6A.6 protein.
Length = 321
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 89 PQERAVPGDARRAHAPVPGPAHQGER 166
P ++ V D RR ++PVP P++ R
Sbjct: 2 PHQKYVD-DTRRVYSPVPSPSYHNGR 26
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = -1
Query: 130 VRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLP 11
V P C Y PVA H Y A + ++R N P
Sbjct: 880 VNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCP 919
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.122 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,765,534
Number of Sequences: 27780
Number of extensions: 80704
Number of successful extensions: 341
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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