Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H06
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    27   1.2  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    25   2.7  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   3.5  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   4.7  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   4.7  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    24   6.2  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    24   8.2  

>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 183 LCVYYQRNKDIVVFGKSVMKN 245
           LC+Y+ +N DI    KSV+ N
Sbjct: 195 LCIYFPKNYDIKYIMKSVLNN 215


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 168 LPNYSFFQSGWTIF*CYELV 109
           +P+Y FF   W  F CY+++
Sbjct: 153 VPSYGFFLIFWGFFTCYQML 172


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 222 TQQCLCCADNIHKAISKLLPNYSFFQSGW 136
           + +C+    NI+  IS   P Y   +SGW
Sbjct: 239 SSECMMTLSNIYSWISTHYPYYRTTKSGW 267


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 168 IIWISLCVYYQRNKDIVVFGKSVMKNYYPAVSLP 269
           I+ I +CVY     + + F  S++   YPAV+ P
Sbjct: 458 ILMILICVYCLSISEKLPFSISMLVEGYPAVANP 491


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 284 LSTVTREAHRWVIILHHTLS 225
           L +V R+   W  +LHHT S
Sbjct: 203 LPSVRRKFFEWFFVLHHTCS 222


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 305 DLRVSPQLSTV-TREAHRWVIILHHTLSKHNNVFVALIIYTKRY 177
           DL     L+T  +R A  W+ I+HH L     +F  L+   K+Y
Sbjct: 541 DLNTIKLLNTAPSRTAQNWLFIMHH-LEIVGYLFPHLVHLDKQY 583


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 165 VIIWISLCVYYQRNKDIVVF 224
           V I+   C+ Y++NK+ +VF
Sbjct: 54  VFIFGMECIVYEKNKEFIVF 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,488,328
Number of Sequences: 5004
Number of extensions: 26923
Number of successful extensions: 86
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)