Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H06
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0747 + 19892090-19893304,19893471-19893602,19894168-198942...    30   0.48 
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    28   2.5  
05_01_0318 - 2488529-2489196,2489773-2490372,2490620-2490773,249...    28   2.5  
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182...    28   2.5  
05_01_0019 - 129767-129931,130078-130257,130491-130728,130833-13...    27   5.9  

>09_04_0747 +
           19892090-19893304,19893471-19893602,19894168-19894215,
           19894697-19894766,19894936-19894963,19896021-19896519
          Length = 663

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 188 CILSAQQRHCCVWKECDEELLP 253
           C  S ++RHCC W E + E +P
Sbjct: 554 CSYSQRRRHCCWWHEQEAEAMP 575


>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
            901912-902016,902245-902391,903273-903354,903445-903786,
            903873-904177,904259-904435,904799-904852,905171-905254,
            905855-905968,906048-906321,907552-907926,908003-908267,
            908352-908538,908615-909052,909895-909966,910037-910630,
            911471-911623,911700-911828,912326-912657,912705-912840,
            913046-913491,913580-915087,915169-915431,915622-915738,
            915844-916014,916743-916845,916930-916988,918360-918461,
            918560-918649,918727-918877,919745-919830,919926-920102,
            920915-920978,921859-922008,923132-923211,923311-923376,
            924540-924747,925502-925575,925761-925848,926140-926312,
            926541-926609,926698-926741,927074-927167,927290-927366,
            927475-927552,927992-928085
          Length = 3314

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +3

Query: 21   GIEAAEEMTTEQLEAMAGGELLKGDAGYFSQVRNTRRSSSQTERSYSLVIIWISLCVYYQ 200
            G+EA   +T E +      +L KG+A  F + R     S     S ++ +    L +++ 
Sbjct: 1402 GMEAVFAVTDELISIGKASKLYKGNALQFLEQRILNEESPGPNDSINITVSVSDLAIFFC 1461

Query: 201  RNKD 212
             +KD
Sbjct: 1462 HSKD 1465


>05_01_0318 -
           2488529-2489196,2489773-2490372,2490620-2490773,
           2490996-2491085,2491926-2492061,2492159-2492418,
           2493448-2493846,2494482-2494661,2494728-2494922,
           2496614-2496678,2497186-2497321,2497442-2497483,
           2498351-2498689
          Length = 1087

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
 Frame = +3

Query: 24  IEAAEEMTTEQLEAMAGGEL----LKGDAGYFSQVRNTRRSSSQTERSYSLVIIWISLCV 191
           + + EE  TEQ  A+ GGEL    L+G     S   N        E      I  I+L  
Sbjct: 446 VHSIEEKVTEQPSALEGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA 505

Query: 192 YYQRNKDI-----VVFGKSVMKNY 248
           Y    K++     ++  K+V+ N+
Sbjct: 506 YLLEKKEVTGPHLIIAPKAVLPNW 529


>03_05_0142 -
           21217375-21217518,21217851-21217899,21218191-21218258,
           21218368-21218413,21218548-21218641,21218775-21218837,
           21219018-21219171,21219414-21219476,21219568-21219681,
           21219779-21219844,21220813-21220870,21221859-21221932,
           21222045-21222110,21223139-21223187,21223483-21223550,
           21223660-21223705,21223908-21224001,21224117-21224179,
           21224290-21224412,21224503-21224536,21224906-21224968,
           21225825-21225911,21226293-21226370
          Length = 587

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 168 IIWISLCVYYQRNKDIVVFGKSVMKNYYPAVSLPGHS 278
           ++ I+ CVY   +  I+  GKS +   +PA+SL G++
Sbjct: 501 LVHIAFCVYAAVSPSILFVGKS-LTGIFPAISLIGNT 536


>05_01_0019 -
           129767-129931,130078-130257,130491-130728,130833-131236,
           131284-131427,131709-131995,132071-132150,132563-132714,
           132793-132909,133292-133450,133546-133946,134106-134423,
           135050-135095,135203-135310
          Length = 932

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 203 QQRHCCVWKECDEELLPSGEPPGSQLKVVGKLADQCQD 316
           +Q+H   WK+      P    PG+    +GKL  +CQD
Sbjct: 436 RQQHSREWKQDSLPHQPKNSSPGT----IGKLGTKCQD 469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,897,745
Number of Sequences: 37544
Number of extensions: 176453
Number of successful extensions: 473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)