Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H06
(360 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82901-1|CAI42864.2| 1593|Homo sapiens THO complex 2 protein. 73 2e-13
AL030996-3|CAI42271.2| 1593|Homo sapiens THO complex 2 protein. 73 2e-13
AL023575-1|CAO03594.1| 1593|Homo sapiens THO complex 2 protein. 73 2e-13
AK023659-1|BAB14630.1| 650|Homo sapiens protein ( Homo sapiens ... 73 2e-13
AF441770-1|AAM28436.1| 1478|Homo sapiens Tho2 protein. 73 2e-13
BC063692-1|AAH63692.1| 398|Homo sapiens THOC2 protein protein. 39 0.004
AK027383-1|BAB55074.1| 143|Homo sapiens protein ( Homo sapiens ... 29 5.7
>Z82901-1|CAI42864.2| 1593|Homo sapiens THO complex 2 protein.
Length = 1593
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/72 (48%), Positives = 49/72 (68%)
Frame = +3
Query: 9 QKMAGIEAAEEMTTEQLEAMAGGELLKGDAGYFSQVRNTRRSSSQTERSYSLVIIWISLC 188
QKMAGIE EEMT EQLEAM GGE LK + GYF Q+RNT++SS + + + + + LC
Sbjct: 684 QKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLC 743
Query: 189 VYYQRNKDIVVF 224
+ + ++ V+F
Sbjct: 744 LLMAQQRNGVIF 755
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = +2
Query: 167 NNLDIALCILSAQQRHCCVWKECDEELLPSGEPPGSQLKVVGKLADQCQDALVQLGPFMA 346
++L + LC+L AQQR+ +++E E+ LK+VGKL DQC D LVQ G F+A
Sbjct: 736 HDLALPLCLLMAQQRNGVIFQEGGEK----------HLKLVGKLYDQCHDTLVQFGGFLA 785
Query: 347 SS 352
S+
Sbjct: 786 SN 787
>AL030996-3|CAI42271.2| 1593|Homo sapiens THO complex 2 protein.
Length = 1593
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/72 (48%), Positives = 49/72 (68%)
Frame = +3
Query: 9 QKMAGIEAAEEMTTEQLEAMAGGELLKGDAGYFSQVRNTRRSSSQTERSYSLVIIWISLC 188
QKMAGIE EEMT EQLEAM GGE LK + GYF Q+RNT++SS + + + + + LC
Sbjct: 684 QKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLC 743
Query: 189 VYYQRNKDIVVF 224
+ + ++ V+F
Sbjct: 744 LLMAQQRNGVIF 755
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = +2
Query: 167 NNLDIALCILSAQQRHCCVWKECDEELLPSGEPPGSQLKVVGKLADQCQDALVQLGPFMA 346
++L + LC+L AQQR+ +++E E+ LK+VGKL DQC D LVQ G F+A
Sbjct: 736 HDLALPLCLLMAQQRNGVIFQEGGEK----------HLKLVGKLYDQCHDTLVQFGGFLA 785
Query: 347 SS 352
S+
Sbjct: 786 SN 787
>AL023575-1|CAO03594.1| 1593|Homo sapiens THO complex 2 protein.
Length = 1593
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/72 (48%), Positives = 49/72 (68%)
Frame = +3
Query: 9 QKMAGIEAAEEMTTEQLEAMAGGELLKGDAGYFSQVRNTRRSSSQTERSYSLVIIWISLC 188
QKMAGIE EEMT EQLEAM GGE LK + GYF Q+RNT++SS + + + + + LC
Sbjct: 684 QKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLC 743
Query: 189 VYYQRNKDIVVF 224
+ + ++ V+F
Sbjct: 744 LLMAQQRNGVIF 755
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = +2
Query: 167 NNLDIALCILSAQQRHCCVWKECDEELLPSGEPPGSQLKVVGKLADQCQDALVQLGPFMA 346
++L + LC+L AQQR+ +++E E+ LK+VGKL DQC D LVQ G F+A
Sbjct: 736 HDLALPLCLLMAQQRNGVIFQEGGEK----------HLKLVGKLYDQCHDTLVQFGGFLA 785
Query: 347 SS 352
S+
Sbjct: 786 SN 787
>AK023659-1|BAB14630.1| 650|Homo sapiens protein ( Homo sapiens
cDNA FLJ13597 fis, clone PLACE1009798, weakly similar to
RLR1 PROTEIN. ).
Length = 650
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/72 (48%), Positives = 49/72 (68%)
Frame = +3
Query: 9 QKMAGIEAAEEMTTEQLEAMAGGELLKGDAGYFSQVRNTRRSSSQTERSYSLVIIWISLC 188
QKMAGIE EEMT EQLEAM GGE LK + GYF Q+RNT++SS + + + + + LC
Sbjct: 57 QKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLC 116
Query: 189 VYYQRNKDIVVF 224
+ + ++ V+F
Sbjct: 117 LLMAQQRNGVIF 128
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = +2
Query: 167 NNLDIALCILSAQQRHCCVWKECDEELLPSGEPPGSQLKVVGKLADQCQDALVQLGPFMA 346
++L + LC+L AQQR+ +++E E+ LK+VGKL DQC D LVQ G F+A
Sbjct: 109 HDLALPLCLLMAQQRNGVIFQEGGEK----------HLKLVGKLYDQCHDTLVQFGGFLA 158
Query: 347 SS 352
S+
Sbjct: 159 SN 160
>AF441770-1|AAM28436.1| 1478|Homo sapiens Tho2 protein.
Length = 1478
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/72 (48%), Positives = 49/72 (68%)
Frame = +3
Query: 9 QKMAGIEAAEEMTTEQLEAMAGGELLKGDAGYFSQVRNTRRSSSQTERSYSLVIIWISLC 188
QKMAGIE EEMT EQLEAM GGE LK + GYF Q+RNT++SS + + + + + LC
Sbjct: 569 QKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLC 628
Query: 189 VYYQRNKDIVVF 224
+ + ++ V+F
Sbjct: 629 LLMAQQRNGVIF 640
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = +2
Query: 167 NNLDIALCILSAQQRHCCVWKECDEELLPSGEPPGSQLKVVGKLADQCQDALVQLGPFMA 346
++L + LC+L AQQR+ +++E E+ LK+VGKL DQC D LVQ G F+A
Sbjct: 621 HDLALPLCLLMAQQRNGVIFQEGGEK----------HLKLVGKLYDQCHDTLVQFGGFLA 670
Query: 347 SS 352
S+
Sbjct: 671 SN 672
>BC063692-1|AAH63692.1| 398|Homo sapiens THOC2 protein protein.
Length = 398
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +2
Query: 278 LKVVGKLADQCQDALVQLGPFMASS 352
LK+VGKL DQC D LVQ G F+AS+
Sbjct: 3 LKLVGKLYDQCHDTLVQFGGFLASN 27
>AK027383-1|BAB55074.1| 143|Homo sapiens protein ( Homo sapiens
cDNA FLJ14477 fis, clone MAMMA1001522. ).
Length = 143
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 185 LCILSAQQRHCCVWKECDEELLPSGEPP 268
LC+L CC W DE L +GE P
Sbjct: 16 LCLLPMAWPECCSWAPGDELLAQAGEHP 43
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,346,151
Number of Sequences: 237096
Number of extensions: 993477
Number of successful extensions: 2379
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2374
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2190862868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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