Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H06
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   3.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   4.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   7.7  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 144 SGWTIF*CYELVKNIQHLL*VIHLQPWLLIVRLSFP 37
           SGW +   Y L   + + +  I L  +   +R +FP
Sbjct: 206 SGWYLNHDYNLENKLNYFIEDIGLNTYYFFLRQAFP 241


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = +2

Query: 212 HCCVWKECDEEL-LPSG 259
           HCC +  CD E+  P+G
Sbjct: 748 HCCDFDACDCEMTCPAG 764


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 222 TQQCLCCADNIHK 184
           T  CL C D+ HK
Sbjct: 33  TSYCLGCGDSCHK 45


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 144 SGWTIF*CYELVKNIQHLL*VIHLQPWLLIVRLSFP 37
           SGW +   Y L   + + +  I L  +   +R +FP
Sbjct: 206 SGWYLNHDYNLENKLIYFIEDIGLNTYYFFLRQAFP 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,150
Number of Sequences: 438
Number of extensions: 2010
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)